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Visualization of Brain Structures

Themes People Talks Sponsors Publications Collaborator's Publications Bibliography

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We work on visualizing and quantifying data collected by diffusion-weighted MRI scans, typically of the human brain. DW-MRI measures properties of water self-diffusion in a chosen set of directions, which may be used to infer the structure of the brain's white matter. Our visualization system for diffusion tensor imaging (DTI) can display brain models in various graphics environments, including the Cave and fishtank VR systems in addition to the standard desktop. Clinical collaborators use our system to discover features and patterns in DTI datasets correlated with disease.

Themes

People

Sponsors

Talks

 

Publications

2014

[Cabeen et al., 2014]
Ryan Cabeen, Mark E. Bastin, and David H. Laidlaw. Reproducibility of an Automated Regional Analysis of White Matter with Diffusion Imaging . In OHBM, 2014. In Press (pdf) (bibtex: Cabeen-2014-RAR).
[Chen et al., 2014]
Jian Chen, Haipeng Cai, Alexander P. Auchus, and David H. Laidlaw. Gryphon: A Little Domain-Specific Programming Language for Diffusion MRI Visualizations. In Handbook of Human Centric Visualization, pages 41-61. Springer New York, 2014,. (bibtex: Chen-2014-GLD).
[Dickie et al., 2014]
David Alexander Dickie, Dominic E. Job, Joanna M. Wardlaw, David H. Laidlaw, and Mark Bastin. Evidence of non-normal distributions in brain imaging data from normal subjects: implications for diagnosis of disease. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), 2014. In Press (pdf) (bibtex: Dickie-2014-END).

2013

[Bolzenius et al., 2013]
Jacob D. Bolzenius, David H. Laidlaw, Ryan Cabeen, Thomas E. Conturo, Amanda R. McMichael, Elizabeth M. Lane, Jodi M. Heaps, Lauren E. Salminen, Laurie M. Baker, John Gunstad, and Robert H. Paul. Impact of body mass index on neuronal fiber bundle lengths among healthy older adults. Brain Imaging and Behavior, 2013. (bibtex: Bolzenius-2013-IBM).
[Cabeen et al., 2013]
Ryan Cabeen, Mark Bastin, and David H. Laidlaw. A Diffusion MRI Resource of 80 Age-varied Subjects with Neuropsychological and Demographic Measures. In Proceedings of ISMRM, 2013. (pdf) (bibtex: Cabeen-2013-DMR).
[Cabeen et al., 2013]
Ryan Cabeen, Mark Bastin, and David H. Laidlaw. Atlas-based multi-direction tractography using tensor registration and orientation statistics . In Proceedings of OHBM, 2013. (pdf) (bibtex: Cabeen-2013-AMT).
[Cabeen et al., 2013]
Ryan Cabeen, Mark Bastin, and David H. Laidlaw. Estimating Constrained Multi-fiber Diffusion MR Volumes by Orientation Clustering. In Proceedings of MICCAI, 2013. (pdf) (bibtex: Cabeen-2013-ECM).
[Cabeen and Laidlaw, 2013]
Ryan Cabeen and David H. Laidlaw. White Matter Supervoxel Segmentation by Axial DP-means Clustering. In Proceedings of Workshop on Medical Computer Vision, MICCAI, 2013. In Press (pdf) (bibtex: Cabeen-2013-WMS).
[Cai et al., 2013]
Haipeng Cai, Jian Chen, Alexander P. Auchus, and David H. Laidlaw. Composing DTI Visualizations with End-user Programming. arXiv preprint arXiv:1310.2923, 2013.
[Guo et al., 2013]
Hua Guo, Arthur Yidi, Steven R. Gomez, Mark J. Schnitzer, David Badre, and David H. Laidlaw. Toward a Visual Interface for Brain Connectivity Analysis. In CHI '13 Extended Abstracts on Human Factors in Computing Systems, pages 1761-1766, 2013. (bibtex: Guo-2013-TVI).
[Salminen et al., 2013]
Lauren E. Salminen, Peter R. Schofield, Elizabeth M. Lane, Jodi M. Heaps, Kerrie D. Pierce, Ryan Cabeen, David H. Laidlaw, Erbil Akbudak, Thomas E. Conturo, Stephen Correia, , and Robert H. Paul. Neuronal fiber bundle lengths in healthy adult carriers of the ApoE4 allele: A quantitative tractography DTI study . Brain Imaging and Behavior, 7(3):274-281, September 2013. (bibtex: Salminen-2013-NFB).
[Zhou et al., 2013]
Wenjin Zhou, Edward Walsh, and David H. Laidlaw. DoubleAx: In-vivo Axom Measurement in the Human Corpus Callosum Using Angular Double-PFG MRI. In Proceedings of OHBM, 2013. (pdf) (bibtex: Zhou-2013-DIA).

2012

[Cabeen et al., 2012]
Ryan Cabeen, Daniel Dickstein, and David H. Laidlaw. Characterization of Pediatric Bipolar Disorder with Quantitative HARDI Tractography Metrics. In Proceedings of ISMRM, 2012. (pdf) (bibtex: Cabeen-2012-CPB).
[Miles and Laidlaw, 2012]
Jadrian Miles and David H. Laidlaw. Predicting DTI Tractography Uncertainty from Diffusion-Weighted-Image Noise. In Proceedings of ISMRM, 2012. (pdf) (bibtex: Miles-2012-PDT).

2011

[Cai et al., 2011]
Haipeng Cai, Jian Chen, A P Aachus, J Huang, and David H. Laidlaw. Measuring Seeding Resolution Dependence of Diffusion Tensor Streamtube Visualization. In IEEE Visualization 2011 Poster Compendium, 2011. (bibtex: Cai-2011-MSR).
[Gongvatana et al., 2011]
Assawin Gongvatana, Ronald Cohen, Stephen Correia, Kathryn N. Devlin, Jadrian Miles, Hakmook Kang, Hernando Ombao, Bradford Navia, David H. Laidlaw, and Karen T. Tashima. Clinical contributors to cerebral white matter integrity in HIV-infected individuals. Journal of Neurovirology, 17(5):477-486, 2011. (pdf) (bibtex: Gongvatana-2011-CCC).
[Huang et al., 2011]
J Huang, Jian Chen, H Cai, R P Friedland, M Z Koubeissi, David H. Laidlaw, and A P Auchus. Diffusion Tensor MRI Tractography reveals altered brainstem fiber connections accompanying agenesis of the corpus callosum. Annals of Neurology (Suppl 15), 2011. (bibtex: Huang-2011-DTM).
[Jianu et al., 2011]
Radu Jianu, Cagatay Demiralp, and David H. Laidlaw. Exploring brain connectivity with two-dimensional neural maps. IEEE TVCG, 2011. (pdf) (bibtex: Jianu-2011-EBJ).

2010

[Gongvatana et al., 2010]
Assawin Gongvatana, Ronald A. Cohen, Stephen Correia, Kathryn N. Devlin, Jadrian Miles, Uraina S. Clark, Michelle Westbrook, George Hana, Hakmook Kang, Hernando Ombao, Bradford Davia, David H. Laidlaw, and Karen Tashima. Impact of Hepatitis C and HIV Coinfection on Cerebral White Matter Integrity. Neurology, 2010. In Review (pdf) (bibtex: Gongvatana-2010-IHC).
[Halilaj et al., 2010]
Eni Halilaj, Stephen Correia, David H. Laidlaw, and Steven Salloway. A Quantitative Tractography Approach for Exploring Associations between White Matter Pathways and Cognitive Functions. In Proceedings of ISMRM, 2010. (pdf) (bibtex: Halilaj-2010-ISM).
[Halilaj et al., 2010]
Eni Halilaj, Stephen Correia, David H. Laidlaw, and salloway. A Quantitative Tractography Approach for Exploring Associations between White Matter Pathways and Cognitive Functions . In Proceedings of ISMRM, 2010. poster (pdf) (bibtex: Halilaj-2010-MRM).
[Jianu et al., 2010]
Radu Jianu, Cagatay Demiralp, and David H. Laidlaw. Visualizing and exploring tractograms via two-dimensional connectivity maps. In Proceedings of ISMRM'10, 2010. (pdf) (bibtex: Jianu-2010-VET).
[Zhou and Laidlaw, 2010]
Wenjin Zhou and David H. Laidlaw. Inferring Axon Properties with double-PGSE MRI using Analytical Water Diffusion Model. In In Proceedings of ISMRM, chosen for podium talk, 2010. (pdf) (bibtex: Zhou-2010-IAP).

2009

[Demiralp et al., 2009]
Cagatay Demiralp, John F. Hughes, and David H. Laidlaw. Coloring 3D Line Fields Using Boy's Real Projective Plane Immersion. IEEE Trans. on Visualization and Computer Graphics (Proc. Visualization '09), 15(6):1457-1463, 2009. (pdf) (bibtex: Demiralp-2009-CLF).
[Halilaj et al., 2009]
Eni Halilaj, Cagatay Demiralp, Stephen Correia, and David H. Laidlaw. Quantitative Tractography Metrics of White Matter Integrity in Diffusion-Tensor MRI Using Diffusivity Scalars. In In Proceedings of ISMRM, 2009. (pdf) (bibtex: Halilaj-2009-ISM).
[Jankun-Kelly et al., 2009]
T. J. Jankun-Kelly, Song Zhang, A. C. Callan-Jones, Robert A. Pelcovits, V. A. Slavin, and David H. Laidlaw. Tensor Visualization and Defect Detection for Nematic Liquid Crystals using Shape Characteristics. In Visualization and Processing of Tensor Fields: Advances and Perspectives, pages 213-238. Springer-Verlag, 2009. (bibtex: JankunKelly-2009-TVD).
[Marai et al., 2009]
G. Elisabeta Marai, Joseph J. Crisco, and David H. Laidlaw. Development of a kinematic 3D carpal model to analyze in vivo soft-tissue interaction across multiple static postures. Proc. Engineering in Medicine and Biology Society, pages 7176-7179, 2009. (pdf) (bibtex: Marai-2009-DK3).
[Miles et al., 2009]
Jadrian Miles, Ronald Cohen, and David H. Laidlaw. Tradeoffs in Supersampling of DTI Metrics. In Proceedings of ISMRM, 2009. (bibtex: Miles-2009-TIS).
[Zhou and Laidlaw, 2009]
Wenjin Zhou and David H. Laidlaw. An Analytical Model of Diffusion and Exchange of Water in White Matter from Diffusion-MRI and its Application in Measuring Axon Radii. In Proceedings of ISMRM, chosen for podium talk, 2009. (pdf) (bibtex: Zhou-2009-AAM).

2008

[Correia et al., 2008]
Stephen Correia, David H. Laidlaw, David Tate, Stephanie Lee, Thom Voorn, Robert Paul, Song Zhang, Steven Salloway, and Paul Malloy. Quantitative Tractography Metrics of White Matter Integrity in Diffusion Tensor MRI. Neuroimage, 2008. (pdf) (bibtex: Correia-2008-QTM).
[Demiralp et al., 2008]
Cagatay Demiralp, Gregory Shakhnarovich, Song Zhang, and David H. Laidlaw. Slicing-based coherence measure for refining clusters of 3D curves. In Proceedings of MICCAI, 2008. (pdf) (bibtex: Demiralp-2008-SCM).
[Demiralp et al., 2008]
Cagatay Demiralp, John F. Hughes, and David H. Laidlaw. Using Boy's Real Projective Plane Immersion for Coloring DT-MRI Slices. In Proceedings of ISMRM, 2008. (bibtex: Demiralp-2008-UBR).
[Epstein et al., 2008]
S Epstein, Stephen Correia, A. MacKay-Brandt, David H. Laidlaw, Paul Malloy, and Steven Salloway. Superior longitudinal fasciculus and working memory in CADASIL. INS, 2008. (pdf) (doc) (bibtex: Epstein-2008-SLF).
[Patel et al., 2008]
K. Patel, Stephen Correia, J. Foley, E. Schlicting, Song Zhang, David H. Laidlaw, and Steven Salloway. Grey and White Matter Changes on MRI and Diffusion-Tensor Imaging and Cognitive Function in Mild Cognitive Impairment. INS, February 2008. Unknown (doc) (bibtex: Patel-2008-GWM).
[Paul et al., 2008]
Robert Paul, Stuart M. Grieve, Raymond Niaura, Sean P. David, David H. Laidlaw, Ronald Cohen, Lawrence Sweet, George Taylor, Clark C. Richard, Sakire Pogan, and Evian Gordon. Chronic cigarette smoking and the microstructural integrity of white matter in healthy adults: a diffusion tensor imaging study. Nicotine and Tobacco Research, 10(1):137-47, January 2008. (bibtex: Paul-2008-CCS).
[Srinivas et al., 2008]
M. Srinivas, M. S. Turner, P. A. Morel, J. M. Janjic, David H. Laidlaw, and Eric T. Ahrens. Longitudinal tracking and quantification of T cells using in vivo 19F MRI. In Proceedings of International Society for Magnetic Resonance and Medicine, 2008. (pdf) (bibtex: Srinivas-2008-LTQ).
[Zhang et al., 2008]
Song Zhang, Stephen Correia, and David H. Laidlaw. Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method. IEEE Transactions on Visualization and Computer Graphics, 14(5):1044-1053, Sept-Oct 2008. (pdf) (bibtex: Zhang-2008-IWF).
[Zhou et al., 2008]
Wenjin Zhou, Stephen Correia, and David H. Laidlaw. Evaluation of Design Features in Interactive 3D Tracts-of-interest Selection Tools in DTI. IEEE Visualization 2008 Poster Compendium, 2008. (pdf) (bibtex: Zhou-2008-EDF).
[Zhou et al., 2008]
Wenjin Zhou, Stephen Correia, and David H. Laidlaw. Haptics-Assisted 3D Lasso Drawing for Tracts-of-interest Selection in DTI Visualization. IEEE Visualization 2008 Poster Compendium (Best Poster Nominee), 2008. (pdf) (bibtex: Zhou-2008-HAL).

2007

[Clayden et al., 2007]
J. D. Clayden, Song Zhang, Stephen Correia, and David H. Laidlaw. Fine-grained comparison of anisotropy differences between groups of white matter tracts. In Proceedings of ISMRM, 2007. (pdf) (bibtex: Clayden-2007-FCA).
[Demiralp et al., 2007]
Cagatay Demiralp, Daniel Acevedo, Song Zhang, David Tate, Stephen Correia, and David H. Laidlaw. Connectivity-aware sectional visualization of DTI volumes. Technical report, Department of Computer Science, Brown University, 2007. (pdf) (bibtex: Demiralp-2007-CSV).
[Grant et al., 2007]
Jon E. Grant, Stephen Correia, Thea Brennan-Krohn, Paul Malloy, David H. Laidlaw, and S. Charles Schulz. Frontal White Matter Integrity in Borderline Personality Disorder with Self-Injurious Behavior. Journal of Neuropsychiatry and Clinical Neurosciences, 2007. In Press (doc) (bibtex: Grant-2007-FWM).
[Jianu et al., 2007]
Doria Jianu, Wenjin Zhou, Cagatay Demiralp, and David H. Laidlaw. Visualizing Spatial Relations Between 3D-DTI Integral Curves Using Texture Patterns. In IEEE Visualization Poster Compendium, 2007. (pdf) (bibtex: Jianu-2007-VSR).
[Laidlaw et al., 2007]
David H. Laidlaw, Stephanie Lee, Stephen Correia, David Tate, Robert Paul, Song Zhang, Steven Salloway, and Paul Malloy. Quantitative Tract of Interest Metrics for White Matter Integrity based on Diffusion Tensor MRI Data. Views Radiology, 8(4):2-4, 2007. (pdf) (bibtex: Laidlaw-2007-QTI).
[McLaughlin et al., 2007]
Nicole C.R. McLaughlin, Robert Paul, Stuart M. Grieve, Leanne M. Williams, David H. Laidlaw, Margaret DiCarlo, Richard Clark, William Whelihan, Ronald Cohen, Thomas J. Whitford, and Evian Gordon. Diffusion Tensor Imaging of the Corpus Callosum: A Cross-Sectional Study Across the Lifespan. International Journal of Developmental Neuroscience, 25(4):215-221, June 2007. (pdf) (bibtex: McLaughlin-2007-DTI).
[Patel et al., 2007]
K. Patel, Stephen Correia, J. Foley, E. Schlicting, Song Zhang, David H. Laidlaw, and Steven Salloway. Cognitive Impairment, Hippocampal Volume, and White Matter Integrity in CADASIL. In Proceedings of INS, 2007. (bibtex: Patel-2007-CIH).
[Paul et al., 2007]
Robert H. Paul, David H. Laidlaw, David F. Tate, Stephanie Lee, Karin Hoth, John Gunstad, Song Zhang, Jeffrey Lawrence, and Tim Flanigan. Neuropsychological and Neuroimaging Outcome of HIV-associated Progressive Multifocal Leukoencephalopathy in the Era of Antiretroviral Therapy. Journal of Integrative Neurocience, 6(1):191-204, March 2007. (pdf) (bibtex: Paul-2007-NNO).
[Srinivas et al., 2007]
Mangala Srinivas, Penelope A. Morel, Lauren A. Ernst, David H. Laidlaw, and Eric T. Ahrens. Fluorine-19 MRI for visualization and quantification of cell migration in a diabetes model. Magnetic Resonance in Medicine, 58:725-734, 2007. (pdf) (bibtex: Srinivas-2007-FMV).
[Zhang et al., 2007]
Song Zhang, Stephen Correia, and David H. Laidlaw. Template-based Automatic DTI Fiber Bundle Labeling. In Proceedings of ISMRM, 2007. (pdf) (bibtex: Zhang-2007-TAD).

2006

[Correia et al., 2006]
Stephen Correia, Stephanie Lee, Paul Malloy, Neil Mehta, Song Zhang, Steven Salloway, and David H. Laidlaw. Diffusion-Tensor MRI Tractography Methods for Assessing White Matter Health and Its Relationship to Cognitive Functioning. In Proceedings of the International Neurophisiological Society, Boston, February 2006. (doc) (bibtex: Correia-2006-DTM).
[Correia et al., 2006]
Stephen Correia, Stephanie Lee, Song Zhang, Paul Malloy, Steven Salloway, and David H. Laidlaw. Diffusion-tensor imaging tractography: Correlation with processing speed in aging. In Abstracts Proceedings of 10th International Conference on Alzheimer's Disease and Related Disorders (BEST POSTER AWARD), pages Abstract P2-270, 2006. (ppt) (bibtex: Correia-2006-DTI).
[Demiralp et al., 2006]
Cagatay Demiralp, Song Zhang, David Tate, Stephen Correia, and David H. Laidlaw. Connectivity-aware sectional visualization of 3D DTI volumes using perceptual flat-torus coloring and edge rendering. In Proceedings of Eurographics, 2006. (pdf) (bibtex: Demiralp-2006-CSV).
[Lee et al., 2006]
Stephanie Lee, Stephen Correia, David Tate, Robert Paul, Song Zhang, Steven Salloway, Paul Malloy, and David H. Laidlaw. Quantitative Tract-of-Interest Metrics for White-Matter Integrity Based on Diffusion Tensor MRI Data. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), 2006. (pdf) (bibtex: Lee-2006-QTM).
[Malloy et al., 2006]
Paul Malloy, Stephen Correia, Glenn Stebbins, and David H. Laidlaw. Neuroimaging of White Matter in Aging and Dementia. The Clinical Neuropsychologist: Special Issue on New Technologies, Invited Manuscript, 2006. In Press (bibtex: Malloy-2006-NWM).
[Simon et al., 2006]
Jack H. Simon, Song Zhang, David H. Laidlaw, David E. Miller, Mark Brown, John Corboy, and Jeffrey Bennett. Identification of Fibers at Risk for Degeneration by Diffusion Tractography in Patients at High Risk for MS after a Clinically Isolated Syndrome. Journal of Magnetic Resonance Imaging, October 2006. (pdf) (bibtex: Simon-2006-IFR).
[Tate et al., 2006]
David Tate, Robert Paul, Kathryn Coop, Timothy Flanigan, Song Zhang, David H. Laidlaw, and Karen Tashima. Altered Diffision Scalar Metrics in the Midsagittal Corpus Callosum are Associated with Cognition Among HIV Patients. In Proceedings of the 14th Conference on Retroviruses and Opportunistic Infections, Los Angeles, CA, 2006. (html) (bibtex: Tate-2006-ADS).
[Zhang et al., 2006]
Song Zhang, Stephen Correia, David F. Tate, and David H. Laidlaw. Correlating DTI fiber clusters with white-matter anatomy. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), 2006. (pdf) (bibtex: Zhang-2006-CDC).
[Zhang, 2006]
Song Zhang. Revealing White Matter Fiber Structure with Diffusion Imaging. PhD thesis, Brown University, August 2006. (pdf) (bibtex: Zhang-2006-RWM).
[Zhou et al., 2006]
Wenjin Zhou, Peter G. Sibley, Song Zhang, David Tate, and David H. Laidlaw. Perceptual Coloring and 2D Sketching for Segmentation of Neural Pathways. Siggraph 2006, Poster Compendium (BEST POSTER AWARD), August 2006. (pdf) (bibtex: Zhou-2006-PCS).

2005

[Correia et al., 2005]
Stephen Correia, Thea Brennan-Krohn, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Ischemic Vascular Disease and Mild Cognitive Impairment. In International Neuropsychological Society conference, February 2005. (ppt) (bibtex: Correia-2005-DTI).
[Correia et al., 2005]
Stephen Correia, Thea Brennan-Krohn, Erin Schlicting, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-tensor imaging in vascular cognitive impairment and mild cognitive impairment: relationship with executive functioning. In Proceedings of the 2nd Congress of the International Society for Vascular, Cognitive and Behavioural Disorders, Florence, Italy, June 2005. (pdf) (bibtex: Correia-2005-DTV).
[Kaufman et al., 2005]
Jason A. Kaufman, Eric T. Ahrens, David H. Laidlaw, Song Zhang, and John M. Allman. Anatomical analysis of an aye-aye brain (Daubentonia madagascariensis, primates: Prosimii) combining histology, structural magnetic resonance imaging, and diffusion-tensor imaging. Anatomical Record, 287A(1):1026-1037, November 2005. (pdf) (bibtex: Kaufman-2005-AAA).
[Salloway et al., 2005]
Steven Salloway, Stephen Correia, Paul Malloy, William Heindel, and David H. Laidlaw. Diffusion-Tensor Imaging: Frontal Executive Function in Vascular Cognitive Impairement. In Collaborative for Translational Brain Research Symposium, April 2005. (ppt) (bibtex: Salloway-2005-DTI).
[Simon et al., 2005]
Jack H. Simon, Song Zhang, David H. Laidlaw, D. E. Miller, M. Brown, J. Corboy, D. Singel, and J. Bennett. Strategy for Detecting Neuronal Fibers at Risk for Neurodegeneration In Earliest MS by Streamtube Tractography at 3T. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (pdf) (ppt) (bibtex: Simon-2005-SDN).
[Simon et al., 2005]
Jack H. Simon, John Corboy, Song Zhang, and David H. Laidlaw. Visualization of Fibers at Risk for Neuronal Tract Degeneration in Early MS by Streamtube Diffusion Tractography. Platform Presentation at the Academy of Neurology, Miami, FL, April 2005. (bibtex: Simon-2005-VFR).
[Tate et al., 2005]
David Tate, J. Gunstad, Robert Paul, Song Zhang, David H. Laidlaw, and Ronald Cohen. Fractional Anisotropy in Subcortical White Matter Regions of Interest Among Cardiovascular Patients. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (ppt) (bibtex: Tate-2005-FAS).
[Vilanova et al., 2005]
A. Vilanova, Song Zhang, G. Kindlmann, and David H. Laidlaw. An Introduction to Visualization of Diffusion Tensor Imaging and its Applications. In Visualization and Image Processing of Tensor Fields. Springer-Verlag, 2005. (pdf) (bibtex: Vilanova-2005-IVD).
[Zhang and Laidlaw, 2005]
Song Zhang and David H. Laidlaw. DTI Fiber Clustering and Cross-subject Cluster Analysis. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (pdf) (bibtex: Zhang-2005-DFC).

2004

[Acevedo et al., 2004]
Daniel Acevedo, Song Zhang, David H. Laidlaw, and Chris Bull. Color Rapid Prototyping for Diffusion Tensor MRI Visualization. In Proceedings of MICCAI 2004 Short Papers, September 2004. (pdf) (bibtex: Acevedo-2004-CRP).
[Ahrens et al., 2004]
Eric T. Ahrens, J.M.Allman, E.Bush, David H. Laidlaw, and Song Zhang. Comparative 3D Anatomy of the Prosimian Brain:DTI and Histological Studies. In Proceedings of the Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, 2004. (pdf) (bibtex: Ahrens-2004-CAP).
[Brennan-Krohn et al., 2004]
Thea Brennan-Krohn, Stephen Correia, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Vascular Disease. In Workshop on aging connections: Advanced MRI of age related white matter changes in the brain. ISMRM, 2004. (bibtex: Brennan-2004-DTI).
[Correia et al., 2004]
Stephen Correia, Thea Brennan-Krohn, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Ischemic Vascular Disease and Mild Cognitive Impairment. In Proceedings of the International Neurophisiological Society, 2004. (pdf) (doc) (bibtex: Correia-2004-DIE).
[Laidlaw et al., 2004]
David H. Laidlaw, Song Zhang, Mark Bastin, Stephen Correia, Steven Salloway, and Paul Malloy. Ramifications of Isotropic Sampling and Acquisition Orientation on DTI Analyses. In Proceedings of the Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, 2004. (pdf) (bibtex: Laidlaw-2004-RIS).
[Laidlaw et al., 2004]
David H. Laidlaw, Song Zhang, Mark Bastin, Stephen Correia, Steven Salloway, and Paul Malloy. Ramifications of Isotropic Sampling and Acquisition Orientation on DTI Analyses. Poster for Research Day at Butler Hospital, Providence, RI, 2004. (pdf) (ppt) (bibtex: Laidlaw-2004-RIA).
[Laidlaw et al., 2004]
David H. Laidlaw, davidkremers, A.W. Toga, Fritz Drury, and Russell E. Jacobs. Applying Lessons from Visual Art to Exploration of the Brain. Panel in Thirty-Seventh Annual Winter Conference on Brain Research, January 2004. (pdf) (bibtex: Laidlaw-2004-ALV).
[Wenger et al., 2004]
Andreas Wenger, Daniel Keefe, Song Zhang, and David H. Laidlaw. Interactive Volume Rendering of Thin Thread Structures within Multivalued Scientific Datasets. IEEE Transactions on Visualization and Computer Graphics, 10(6):664-672, November/December 2004. (pdf) (bibtex: Wenger-2004-IVR).
[Zhang et al., 2004]
Song Zhang, Mark Bastin, David H. Laidlaw, Saurabh Sinha, Paul A. Armitage, and Thomas S. Deisboeck. Visualization and Analysis of White Matter Structural Asymmetry in Diffusion Tensor MR Imaging Data. Magnetic Resonance in Medicine, 51(1):140-147, 2004. (pdf) (bibtex: Zhang-2004-VAW).
[Zhang et al., 2004]
Song Zhang, Gordon Kindlmann, and David H. Laidlaw. Diffusion Tensor MRI Visualization. In Visualization Handbook. Academic Press, June 2004. (pdf) (bibtex: Zhang-2004-DTM).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. A Model for some Subcortical DTI Planar and Linear Anisotropy. MICCAI 2004, September 2004. (pdf) (bibtex: Zhang-2004-MSS).
[Zhang et al., 2004]
Song Zhang, Jack H. Simon, David H. Laidlaw, Mark Brown, and David M. Miller. Visualization of the Interaction of Multiple Sclerosis lesions with adjacent white matter fibers using Streamtubes and Streamsurfaces. In IEEE Visualization Poster Compendium, October 2004. (pdf) (bibtex: Zhang-2004-VIM).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. DTI Fiber Clustering in the Whole Brain. IEEE Visualization 2004 Poster Compendium, October 2004. (pdf) (bibtex: Zhang-2004-DFC).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. Towards a Global Tractography-based Model of FA. In Workshop on aging connections: Advanded MRI of age related white matter changes in the brain. ISMRM, 2004. (pdf) (bibtex: Zhang-2004-TGT).

2003

[Demiralp et al., 2003]
Cagatay Demiralp, David H. Laidlaw, Cullen Jackson, Daniel Keefe, and Song Zhang. Subjective Usefulness of CAVE and Fish Tank VR Display Systems for a Scientific Visualization Application. In IEEE Visualization Poster Compendium, Seattle, WA, 2003. (pdf) (bibtex: Demiralp-2003-SUC).
[Zhang et al., 2003]
Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing Diffusion Tensor MR Images Using Streamtubes and Streamsurfaces. IEEE Transactions on Visualization and Computer Graphics, 9(4):454-462, October 2003. (pdf) (bibtex: Zhang-2003-VDT).

2002

[DaSilva et al., 2002]
Marco DaSilva, Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing the Differences between Diffusion Tensor Volume Images. In Proceedings ISMRM Workshop in Diffusion MRI: Biophysical Issues, pages 237-238, March 2002. (pdf) (bibtex: DaSilva-2002-VDD).
[Zhang et al., 2002]
Song Zhang, David H. Laidlaw, Mark Bastin, Saurabh Sinha, and Thomas S. Deisboeck. Application of DTI Visualization and Analysis on a Data Set from a Brain Tumor Patient. In IEEE Visualization Poster Compendium, October 2002. (pdf) (bibtex: Zhang-2002-AOD).
[Zhang and Laidlaw, 2002]
Song Zhang and David H. Laidlaw. Hierarchical Clustering of Streamtubes. Technical Report CS-02-18, Brown University Computer Science Department, August 2002. (bibtex: Zhang-2002-HCO).

2001

[Ahrens et al., 2001]
Eric T. Ahrens, David Dubowitz, and David H. Laidlaw. Peripheral Somatosensory fMRI in Mouse at 11.7 Tesla. In Proceedings of ISMRM, Glasgow, Scotland, 2001. (bibtex: Ahrens-2001-PSF).
[Ahrens et al., 2001]
Eric T. Ahrens, D. J. Dubowitz, and David H. Laidlaw. FMRI in mouse at 11.7 Tesla. In Proceedings of the International Society for Magnetic Resonance in Medicine 9th Scientific Meeting, Berkeley, CA, 2001. (bibtex: Ahrens-2001-FMT).
[DaSilva et al., 2001]
Marco DaSilva, Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing Diffusion Tensor Volume Differences. In Visualization '01 Work in Progress Proceedings, pages 16-17, October 2001. (pdf) (bibtex: DaSilva-2001-VDT).
[Jacobs et al., 2001]
Russell E. Jacobs, David H. Laidlaw, G. Burns, R. Moats, and A. Toga. Multimodal Multidimensional Digital Develomental Atlas of Mouse Brain. In Winter Conference on Brain Research. Panel Session, January 2001. (bibtex: Jacobs-2001-MMD).
[Laidlaw et al., 2001]
David H. Laidlaw, Kurt Fleischer, and Alan Barr. Partial-Volume Bayesian Classification with Voxel Histograms. In Handbook of Medical Image Processing, pages 195-211. Academic Press, 2001. (pdf) (bibtex: Laidlaw-2001-PVB).
[Severance et al., 2001]
Kurt Severance, Paul Brewster, Barry Lazos, and Daniel Keefe. Wind Tunnel Data Fusion and Visualization in an Immersive Environment: A Case Study. In Proceedings of IEEE Visualization 2001, pages 505-508, October 2001. (pdf) (bibtex: Severance-2001-WTD).
[Zhang et al., 2001]
Song Zhang, Cagatay Demiralp, Daniel Keefe, Marco DaSilva, Benjamin D. Greenberg, Peter J. Basser, Carlo Pierpaoli, E. A. Chiocca, T. S. Deisboeck, and David H. Laidlaw. An Immersive Virtual Environment for DT-MRI Volume Visualization Applications: a Case Study. In Proceedings of IEEE Visualization 2001, pages 437-440, October 2001. (pdf) (bibtex: Zhang-2001-IVE).
[Zhang et al., 2001]
Song Zhang, Cagatay Demiralp, Marco DaSilva, Daniel Keefe, David H. Laidlaw, Benjamin D. Greenberg, Peter J. Basser, Carlo Pierpaoli, E.A. Chiocca, and T. S. Diesboeck. Toward Application of Virtual Reality to Visualization of DT-MRI Volumes. In Proceedings MICCAI, October 2001. (pdf) (bibtex: Zhang-2001-TAV).
[Zhang and Laidlaw, 2001]
Song Zhang and David H. Laidlaw. Elucidating Neural Structure in Diffusion Tensor MRI Volumes using Streamtubes and Streamsurfaces. In Proc. 9th International Society of MR in Medicine, April 2001. (pdf) (bibtex: Zhang-2001-ENS).

2000

[DaSilva et al., 2000]
Marco DaSilva, David H. Laidlaw, and J. Michael Tyszka. Reducing Errors due to Partial-Volume Effects and Noise in Pressure Maps Calculated for MR Velocity Data. In Proc. 8th International Society for MR in Medicine, April 2000. (bibtex: DaSilva-2000-RED).
[Zhang et al., 2000]
Song Zhang, Charles T. Curry, Daniel S. Morris, and David H. Laidlaw. Streamtubes and Streamsurfaces for Visualizing Diffusion Tensor MRI Volume Images. In Visualization '00 Work in Progress, October 2000. (pdf) (bibtex: Zhang-2000-SSV).
[Zhang et al., 2000]
Song Zhang, Charles T. Curry, Daniel S. Morris, and David H. Laidlaw. Visualizing Diffusion Tensor MR Images Using Streamtubes and Streamsurfaces. Poster at Human Brain Project Annual Meeting, NIH, Bethesda, MD, May 2000. (bibtex: Zhang-2000-VDT).

1999

[Ahrens et al., 1999]
Eric T. Ahrens, David H. Laidlaw, Carol Readhead, and Scott E. Fraser. Investigating White Matter Diffusion Anisotropy Using the Desmyelinating Shiverer Mutant Mouse. In Proc. 7th International Society for MR in Medicine, May 1999. (bibtex: Laidlaw-1999-IWM).
[Jacobs et al., 1999]
Russell E. Jacobs, Eric T. Ahrens, Mary E Dickinson, and David H. Laidlaw. Towards a MicroMRI Atlas of Mouse Development. Computerized Medical Imaging and Graphics, 23(1):15-24, January-February 1999. (pdf) (bibtex: Jacobs-1999-TMA).
[Laidlaw, 1999]
David H. Laidlaw. Continuous Bayesian Tissue Classification for Visualization Techniques. In Data Visualization Techniques, pages 107-129. John Wiley and Sons Ltd, 1999. (pdf) (bibtex: Laidlaw-1999-CBT).
[Laidlaw et al., 1999]
David H. Laidlaw, Kristen L. Cook, and Yuri M. Goldfeld. Evaluating Effects of Diffusion Weighting Choice on Accuracy of Diffusion Tensor MRI of Fixed Mouse Spinal Cord. In Proc. 7th International Society for MR in Medicine, Poster Session, May 1999. (pdf) (bibtex: Laidlaw-1999-EED).
[Laidlaw and Tyszka, 1999]
David H. Laidlaw and J.Michael Tyszka. A Demonstration of Errors in Relative Pressure Calculations for MR Velocity Data. In Proc. 7th International Society for MR in Medicine, May 1999. (pdf) (bibtex: Laidlaw-1999-DER).

1998

[Ahrens et al., 1998]
Eric T. Ahrens, David H. Laidlaw, Carol Readhead, Celia F. Brosnan, and Scott E. Fraser. MR Microscopy of Transgenic Mice that Spontaneously Aquire Experimental Allergic Encephalomyelitis. Magnetic Resonance in Medicine, 40(1):119-132, July 1998. (pdf) (bibtex: Ahrens-1998-MMT).
[Ahrens et al., 1998]
Eric T. Ahrens, Scott E. Fraser, P. T. Narasimhan, Russell E. Jacobs, and David H. Laidlaw. Multi-valued MR Microscopy of the Embryonic Mouse Nervous System. In abstract and poster, ENC, 1998. (bibtex: Ahrens-1998-MVM).
[Laidlaw et al., 1998]
David H. Laidlaw, Eric T. Ahrens, davidkremers, Matthew J. Avalos, Carol Readhead, and Russell E. Jacobs. Visualizing Diffusion Tensor Images of the Mouse Spinal Cord. In Proceedings of IEEE Visualization 1998, pages 127-134. IEEE Computer Society Press, October 1998. (pdf) (bibtex: Laidlaw-1998-VDT).
[Laidlaw et al., 1998]
David H. Laidlaw, Kurt W. Fleischer, and Alan H. Barr. Partial-Volume Bayesian Classification of Material Mixtures in MR Volume Data Using Voxel Histograms. IEEE Transactions on Medical Imaging. Also reprinted in 2000 yearbook of Medical Informatics, International Medical Informatics Assoc., Shattauer, 2000., 17(1):74-86, February 1998. (pdf) (bibtex: Laidlaw-1998-PVB).
[Laidlaw et al., 1998]
David H. Laidlaw, Eric T. Ahrens, Matthew J. Avalos, Mark D. Montague, Alan H. Barr, Russell E. Jacobs, and Scott E. Fraser. Goal-directed Optimization of Magnetic Resonance Imaging. In Neuroscience Abstracts, November 1998. (bibtex: Laidlaw-1998-GOM).
[Laidlaw and Tyszka, 1998]
David H. Laidlaw and J. Michael Tyszka. Evaluating Numerical Methods for Blood Pressure MRI. In Laverna Titus Young Investigators forum, May 1998. (bibtex: Laidlaw-1998-ENM).
[Laidlaw, 1998]
David H. Laidlaw. On the Optimality of Partial Volume Classification Methods: Voxel Histogram Classification vs. Eigenimage Filtering. IEEE Transactions on Medical Imaging, 17(6):1094-1096, December 1998. (pdf) (bibtex: Laidlaw-1998-OPV).

1997

[Laidlaw et al., 1997]
David H. Laidlaw, Alan M. Barr, and Russell E. Jacobs. Goal-directed Magnetic Resonance Brain Micro-imaging. In Neuroinformatics: An Overview of the Human Brain Project, chapter 6, pages 125-202. Lawrence Erlbaum Assoc., 1997. (bibtex: Laidlaw-1997-GDM).

1995

[Ghosh et al., 1995]
Pratik Ghosh, David H. Laidlaw, Kurt W. Fleischer, Alan Barr, and Russell E. Jacobs. Pure Phase-Encoded MRI and Classification of Solids. IEEE Transactions on Medical Imaging, 14(3):608-615, 1995. (pdf) (bibtex: Ghosh-1995-PPM).
[Laidlaw, 1995]
David H. Laidlaw. Bayesian Mixture Classification of MRI Data for Geometric Modeling and Visualization . In abstract and poster for International Workshop on Mixtures, September 1995. (bibtex: Laidlaw-1995-BMC).
[Laidlaw, 1995]
David H. Laidlaw. Geometric Model Extraction from Magnetic Resonance Volume Data. PhD thesis, California Institute of Technology, 1995. (pdf) (bibtex: Laidlaw-1995-GME).

1990

[Kirk et al., 1990]
David B. Kirk, David H. Laidlaw, and Alan H. Barr. Registration and Computational Staining of Multiple MRI Data Sets. In Proceedings of AUSGRAPH 1990, September 1990. (bibtex: Kirk-1990-RCS).
Top

Collaborator's Publications

2005

[Simon, 2005]
Jack H. Simon. MRI in Multiple Sclerosis. Physical Medicine and Rehabilitation Clinics of North America, 2005. In Press (pdf) (bibtex: Simon-2005-MRI).
[Simon, 2005]
Jack H. Simon. Update on Multiple Sclerosis. Radiology Clinics of North America, 2005. In Press (pdf) (bibtex: Simon-2005-UMS).

2001

[Simon et al., 2001]
Jack H. Simon, L. Jacobs, and R.P. Kinkel. Transcallosal bands: a sign of neuronal tract degeneration in early MS? Neurology, 57(10):1888-90, November 2001. (bibtex: Simon-2001-TBS).

2000

[Simon et al., 2000]
Jack H. Simon, R.P. Kinkel, L. Jacobs, L. Bub, and N. Simonian. A Wallerian degeneration pattern in patients at risk for MS. Neurology, 54(5):1155-60, March 2000. (bibtex: Simon-2000-WDP).

1998

[Simon et al., 1998]
Jack H. Simon, L.D. Jacobs, M. Campion, K. Wende, N. Simonian, D.L. Cookfair, R.A. Rudick, R.M. Herndon, J.R. Richert, A.M. Salazar, J.J. Alam, J.S. Fischer, D.E. Goodkin, C.V. Granger, M. Lajaunie, A.L. Martens-Davidson, M.J. Meyer, J. Sheeder, K. Choi, A.L. Scherzinger, D.M. Bartoszak, D.N. Bourdette, J. Braiman, C.M. Brownscheidle, M.E. Coats, S.L. Cohan, D.S. Dougherty, R.P. Kinkel, M.K. Mass, F.E. Munschauer, R.L. Priore, P.M. Pullicino, B.J. Scherokman, B. Weinstock-Guttman, R.H. Whitham, and The Multiple Sclerosis Collaborative Research Group (MSCRG). Magnetic Resonance Studies of Intramuscular r-Interferon Beta-1a for Relapsing Magnetic Resonance Studies of Intramuscular r-Interferon Beta-1a for Relapsing Multiple Sclerosis. Annals of Neurology, 43:79-87, 1998. (bibtex: Simon-1998-MRS).
Top

Other Bibliography

2008

[cad et al., 2008]
cad, GregoryShakhnarovich, sz, and dhl. A slicing-based coherence measure for clusters of DTI integral curves. In Proceedings of MICCAI, 2008. In Review (pdf) (bibtex: Demiralp-2008-SBC).

2006

[Ennis and Kindlmann, 2006]
Daniel B. Ennis and Gordon Kindlmann. Orthogonal Tensor Invariants and the Analysis of Diffusion Tensor Magnetic Resonance Images. Magnetic Resonance in Medicine, 55:136-146, 2006. (pdf) (bibtex: Ennis-2006-OTI).
[Thottakara et al., 2006]
Paul Thottakara, Mariana Lazar, Sterling C. Johnson, and Andrew L. Alexander. Application of Brodmann's area templates for ROI selection in white matter tractography studies. NeuroImage, 29(3):868-878, February 2006. (pdf) (bibtex: Thottakara-2006-ABA).

2005

[Ffytche and Catani, 2005]
Dominic H. Ffytche and Marco Catani. Beyond localization: from Hodology to Function. Philosophical Transactions of the Royal Society, 360:767-779, April 2005. (pdf) (bibtex: Ffytche-2005-BLH).
[Jones et al., 2005]
Derek K. Jones, Adam R. Travis, Greg Eden, Carlo Pierpaoli, and Peter Basser. PASTA: Pointwise Assessment of Streamline Tractography Attributes. Magnetic Resonance in Medicine, 53:1462-1467, 2005. (pdf) (bibtex: Jones-2005-PPA).
[Moffat et al., 2005]
Bradford A. Moffat, Thomas L. Chenevert, Theodore S. Lawrence, Charles R. Meyer, Timothy D. Johnson, Qian Dong, Christina Tsien, Suresh Mukherji, Douglas J. Quint, Stephen S. Gebarski, Patricia L. Robertson, Larry R. Junck, Alnawaz Rehemtulla, and Brian D. Ross. Functional diffusion map: A noninvasive MRI biomarker for early stratification of clinical brain tumor response. Proceedings of the National Academy of Sciences, 102(15):5524-5529, April 2005. (pdf) (bibtex: Moffat-2005-FDM).
[Peters et al., 2005]
Nils Peters, Christian Opherk, Adrian Danek, Clive Ballard, Jürgen Herzog, and Martin Dichgans. The Pattern of Cognitive Performance in CADASIL: A Monogenic Condition Leading to Subcortical Ischemic Vascular Dementia. Am J Psychiatry, November 2005. (pdf) (bibtex: Peters-2005-PCP).
[Pfefferbaum et al., 2005]
Adolf Pfefferbaum, Elfar Adalsteinsson, and Eidith V. Sullivan. Frontal circuitry degradation marks healthy adult aging: Evidence from diffusion tensor imaging. NeuroImage, 26:891-899, 2005. (pdf) (bibtex: Pfefferbaum-2005-ECD).

2004

[Brown et al., 2004]
Edward B. Brown, Yves Boucher, Selim Nasser, and Rakesh K. Jain. Measurement of Macromolecular Diffusion Coefficients in Human Tumors. Microvascular Research, 67:231-236, 2004. (pdf) (bibtex: Brown-2004-MMD).
[Farkas et al., 2004]
Eszter Farkas, Gergely Donka, Rob A. I. de Vos, Andras Mihaly, Ferenc Bari, and Paul G. M. Luiten. Experimental cerebral hypoperfusion induces white matter injury and microglial activation in the rat brain. Acta Neuropathol, 108:57-64, 2004. (pdf) (bibtex: Farkas-2004-ECH).
[Field et al., 2004]
A.S. Field, A.L. Alexander, Y.C. Wu, K.M. Hasan, B. Witwer, and B. Badie. Diffusion tensor eigenvector directional color imaging patterns in the evaluation of cerebral white matter tracts altered by tumor. Journal of Magnetic Resonance Imaging, 20:555-562, 2004. (bibtex: Field-2004-DTE).
[Ge et al., 2004]
Y. Ge, M. Law, G. Johnson, J. Herbert, J. S. Babb, L.J. Mannon, and R.I. Grossman. Preferential Occult Injury of Corpus Callosum in Multiple Sclerosis Measured by Diffusion Tensor Imaging. J. Magn. Reson. Imaging, 20(1):1-7, July 2004. (pdf) (bibtex: Ge-2004-POI).
[Johnson and Hansen, 2004]
Christopher R. Johnson and Charles D. Hansen. Visualization Handbook. Academic Press, June 2004. (bibtex: Johnson-2004-VHA).
[Laidlaw et al., 2004]
David Laidlaw, Eric Ahrens, John Allman, and Mark Bastin. MRI+DTI-Based Tools for Analyzing White Matter Variation. NIH grant proposal, 2004. (pdf) (bibtex: Laidlaw-2004-DTI).
[NIH, 2004]
NIH. Review for Grant Proposal: MRI+DTI-Based Tools for Analyzing White Matter Variation, 2004. Unpublished (pdf) (bibtex: NIH-2004-DTI).
[Vilanova et al., 2004]
A. Vilanova, G. Berenschot, and C. van Pul. DTI Visualization with Streamsurfaces and Evenly-Spaced Volume Seeding. In VisSym '04 Joint Eurographics—I.E.E.E. T.C.V.G. Symposium on Visualization, Conference Proceedings, pages 173-182, 2004. (pdf) (bibtex: Vilanova-2004-DTI).

2003

[Ding et al., 2003]
Song-Lin Ding, Robert J. Morecraft, and Gary W. Van Hoesen. Topography, Cytoarchitecture, and Cellular Phenotypes of Cortical Areas That Form the Cingulo-Parahippocampal Isthmus and Adjoining Retrocalcarine Areas in the Monkey. The Journal of Comparative Neurology, 456(2):184-201, 2003. (pdf) (bibtex: Ding-2003-TCC).
[Koshibu et al., 2003]
K. Koshibu, P. Levitt, and Eric T. Ahrens. Sex-specific post-puberty changes in mouse brain structures revealed by three-dimensional magentic resonance microscopy. In Proceedings of the National Academy of Science, 2003. (bibtex: Koshibu-2003-SPC).
[Morecraft and Hoesen, 2003]
R.J. Morecraft and G.W. Van Hoesen. Functional Neuroanatomy of Limbic Structures and Some Relationships with Prefrontal Cortex. In Neuropsychiatry, 2nd Ed., pages 294-327. Lippincott Williams and Wilkins, 2003. (bibtex: Morecraft-2003-FNL).
[T. E. J. et al., 2003]
T. E. J. Behrens, H. Johansen-Berg, M. W. Woolrich, S. M. Smith, C. A. M. Wheeler-Kingshott, P. A. Boulby, G. J. Barker, E. L. Sillery, K. Sheehan, O. Ciccarelli, A. J. Thompson, J. M. Brady, and P. M. Matthews. Non-invasive Mapping of Connections between Human Thalamus and Cortex using Diffusion Imaging. Nature Neuroscience, 6(7):750-757, July 2003. (pdf) (bibtex: Behrens-2003-NMC).
[Wiegell et al., 2003]
M. R. Wiegell, D. S. Tuch, H. B. Larsson, and V. J. Wedeen. Automatic segmentation of thalamic nuclei from diffusion tensor magnetic resonance imaging. Neuroimage, 19:391-401, June 2003. (pdf) (bibtex: Wiegell-2003-AST).
[Wolkin et al., 2003]
Adam Wolkin, Steven J. Choi, Sandor Szilagyi, Michael Sanfilipo, John P. Rotrosen, and Kelvin O. Lim. Inferior Frontal White Matter Anisotropy and Negative Symptoms of Schizophrenia: A Diffusion Tensor Imaging Study. American Journal of Psychiatry, 160:572-574, 2003. (pdf) (bibtex: Wolkin-2003-IFW).

2002

[Ahrens et al., 2002]
Eric T. Ahrens, P.T. Narasimhan, T. Nakada, and Russell E. Jacobs. Small animal neuro-imaging using Magnetic resonance microscopy. Prog. Nuclear Magnetic Resonance Sp., 4:275, 2002. (bibtex: Ahrens-2002-SAN).
[Beaulieu, 2002]
Christian Beaulieu. The Basis of Anisotropic Water Diffusion in the Nervous System—A Technical Review. NMR in Biomedicine, 15:435-455, 2002. (pdf) (bibtex: Beaulieu-2002-BAW).
[Bozzali et al., 2002]
M. Bozzali, M. Cercignani, M. Sormani, G. Comi, and M. Filippi. Quantification of Brain Gray Matter Damage in Different MS Phenotypes by Use of Diffusion Tensor MR Imaging. A.J.N.R., 23:985-988, 2002. (bibtex: Bozzali-2002-QBG).
[Brun et al., 2002]
A. Brun, M. Bjornemo, R. Kikinis, and C.-F. Westin. White Matter Tractography Using Sequential Importance Sampling. In ISMRM 2002, page 1131, 2002. (pdf) (bibtex: Brun-2002-WMT).
[Buxton, 2002]
Rick Buxton. Diffusion and the MR Signal, 2002. (pdf) (bibtex: Buxton-2002-DAT).
[Buxton, 2002]
Rick Buxton. Figures for Diffusion and the MR Signal, 2002. (pdf) (bibtex: Buxton-2002-FIG).
[Campbell et al., 2002]
J. S. W. Campbell, K. Siddiqi, Baba C. Vemuri, and G. B. Pike. A Geometric Flow for White Matter Fibre Tract Reconstruction. In International Symposium On Biomedical Imaging, 2002. (pdf) (bibtex: Campbell-2002-GFW).
[DS, 2002]
Tuch DS. Mapping cortical connectivity with diffusion MRI. In 2002 IEEE International Symposium on Biomedical Imaging, 2002. (bibtex: Tuch-2002-MCC).
[ .html ]
[Donnell et al., 2002]
Lauren O Donnell, Steven Haker, and Carl-Fredrik Westin. New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor MRI: Elliptic PDEs and Geodesics in a Tensor-Warped Space . In MICCAI2002, 2002. (bibtex: ODonnell-2002-NAE).
[Guimond et al., 2002]
Alexandre Guimond, Charles R. G. Guttmann, Simon K. Warfield, and Carl-Fredrik Westin. Deformable Registration of DT-MRI Data Based on Transfomration Invariant Tensor Characteristics. In Proceedings of the IEEE International Symposium on Biomedical Imaging, July 2002. (pdf) (bibtex: Guimond-2002-DRD).
[Guo et al., 2002]
A. Guo, J. MacFall, and J. Provenzale. Multiple Sclerosis; Diffusion Tensor MR Imaging for Evaluation of Normal-Appearing White Matter. Radiology, 222:729-736, 2002. (bibtex: Guo-2002-MSD).
[Hagmann et al., 2002]
P. Hagmann, J.-P. Thiran, P. Vandergheynst, S. Clarke, and R. Meuli. Statistical Fiber Tracking on DT-MRI data as a Potential Tool for Morphological Brain Studies. In ISMRM Workshop on Diffusion MRI: Biophysical Issues (2002), page 240, 2002. (pdf) (bibtex: Hagmann-2002-SFT).
[Morecraft et al., 2002]
R.J. Morecraft, J. Herrick, K.S. Stilwell-Morecraft, J.L. Louie, J. Ottenbacher, C.M. Schroeder, and M. Schoolfield. Localization of Arm Representation in the Corona Radiata and Internal Capsule in the Non-Human Primate. Brain, 125(1):176-198, January 2002. (pdf) (bibtex: Morecraft-2002-LAR).
[Mori et al., 2002]
Susumu Mori, Walter E. Kaufmann, Christos Davatzikos, Bram Stieltjes, Laura Amodei, Kim Fredericksen, Godfrey D. Pearlson, Elias R. Melhem, Meiyappan Solaiyappan, Gerald V. Raymond, Hugo W. Moser, and Peter C.M. van Zijl. Imaging Cortical Association Tracts in the Human Brain Using Diffusion-Tensor-Based Axonal Tracking, February 2002. (pdf) (bibtex: Mori-2002-ICT).
[Narasimhan and Jacobs, 2002]
P. T. Narasimhan and Russell E. Jacobs. Neuro-Anatomical Micro-Magnetic Resonance Imaging. In Brain Mapping: The Methods. 2nd Edition. Academic Press, New York, NY, 2002. (bibtex: Narasimhan-2002-NMR).
[Parker et al., 2002]
Geoffrey J. M. Parker, Klaas E. Stephan, Gareth J. Barker, James B. Rowe, David G. MacManus, Claudia A. M. Wheeler-Kingshott, Olga Ciccarelli, Richard E. Passingham, Rachel L. Spinks, Roger N. Lemon, and Robert Turner. Initial Demonstration of in Vivo Tracing of Axonal Projections in the Macaque Brain and Comparison with the Human Brain Using Diffusion Tensor Imaging and Fast Marching Tractography. NeuroImage, 15(797-809), April 2002. (pdf) (bibtex: Parker-2002-IDI).
[Peters, 2002]
Alan Peters. The effects of normal aging on myelin and nerve fibers: A review. Journal of Neurocytology, 31:581-593, 2002. (pdf) (bibtex: Peters-2002-ENA).
[Ruiz-Alzola et al., 2002]
J. Ruiz-Alzola, C.F. Westin, S.K. Warfield, C. Alberola, S. Maier, and R. Kikinis. Nonrigid registration of 3D tensor medical data. Medical Image Analysis, 6(2):143-161, June 2002. (pdf) (bibtex: RuizAlzola-2002-NR3).
[Tseng et al., 2002]
W. Y. I. Tseng, C. P. Lin, J. H. Chen, and V. J. Wedeen. Diffusion Spectrum Imaging of Complex Cortical Cytoarchitecture in Adult Rats. In Proceedings of 10th Annual Meeting ISNMRM, Honolulu, 2002. (bibtex: Tseng-2002-DSI).
[Tuch, 2002]
D. S. Tuch. Diffusion MRI of complex tissue structure. PhD thesis, Harvard, 2002. (pdf) (bibtex: Tuch-2002-DMC).
[Tuch et al., 2002]
D.S. Tuch, T.G. Reese, M.R. Wiegell, N. Makris, J.W. Belliveau, and V.J. Wedeen. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magnetic Resonance in Medicine, 48(4):577-582, October 2002. (pdf) (bibtex: Tuch-2002-HAR).
[Westin et al., 2002]
C.-F. Westin, S.E. Maier, H. Mamata, A. Nabavi, F.A. Jolesz, and R. Kikinis. Processing and visualization for diffusion tensor MRI. Medical Image Analysis, 6(93-108), 2002. (pdf) (bibtex: Westin-2002-PVD).

2001

[Bigler and Tate, 2001]
Erin D. Bigler and David F. Tate. Brain Volume, Intracranial Volume, and Dementia. Investigative Radiology, 36(9):539-546, 2001. (pdf) (bibtex: Bigler-2001-BVI).
[Dhenian et al., 2001]
M. Dhenian, S. W. Ruffins, and Russell E. Jacobs. Three-Dimensional Digital Mouse Atlas using High Resolution MRI. Developmental Biology, 232(2):458-470, 2001. (bibtex: Dhenian-2001-TDD).
[Filippi et al., 2001]
Christopher G. Filippi, Aziz M. Ulug, Elizabeth Ryan, Steven J. Ferrando, and Wilfred van Gorp. Diffusion Tensor Imaging of Patients with HIV and Normal-appearing White Matter on MR Images of the Brain. American Journal of Neuroradiology, 22:277-283, February 2001. (pdf) (bibtex: Filippi-2001-DTI).
[Filippi et al., 2001]
M. Filippi, M. Cercignani, M. Inglese, M. Horsfield, and G. Comi. Diffusion Tensor Magnetic Resonance Imaging in Multiple Sclerosis. Neurology, 56:304-311, 2001. (bibtex: Filippi-2001-DTM).
[Inati et al., 2001]
S. Inati, H. Farid, K. Sherwin, and S. Grafton. A Global Probabilistic Approach to Fiber Tractography with Diffusion Tensor MRI . In Human Brain Mapping 2001, 2001. (bibtex: Inati-2001-GPA).

2000

[Assaf et al., 2000]
Y. Assaf, A. Mayk, and Y. Cohen. Displacement Imaging of Spinal Cord Using Q-Space Diffusion-Weighted MRI. Magn. Reson. Med., 44:713-722, 2000. (bibtex: Assaf-2000-DIS).
[Assaf and Cohen, 2000]
Y. Assaf and Y. Cohen. Assignment of Water Slow Diffusing Component in CNS Using Q-Space Diffusion MRS: Implications for Fiber Tract Imaging. Magnetic Resonance in Medicine, 43:191-199, 2000. (bibtex: Assaf-2000-AWS).
[Bammer et al., 2000]
R. Bammer, M. Augustin, S. Strasser-Fuchs, T. Seifert, P. Kapeller, R. Stollberger, F. Ebner, HP. Hartung, and F. Fazekas. Magnetic resonance diffusion tensor imaging for characterizing diffuse and focal white matter abnormalities in multiple sclerosis. Magnetic Resonance in Medicine, 44(4):583-91, October 2000. (bibtex: Bammer-2000-MRD).
[Jacobs et al., 2000]
Russell Jacobs, Scott Fraser, Jerry Solomon, John Allman, Al Barr, David H. Laidlaw, and Tom Meade. Human Brain Project. NIH grant annual report, 2000. Unpublished (pdf) (bibtex: Jacobs-2000-HBP).
[Koch and Norris, 2000]
Martin Koch and David G. Norris. An assessment of eddy current sensitivity and correction in single-shot diffusion-weighted imaging. Physics in Medicine and Biology, 45:3821-3822, 2000. (pdf) (bibtex: Koch-2000-AEC).
[Morecraft et al., 2000]
Robert J. Morecraft, Kathleen S. Rockland, and Gary W. Van Hoesen. Localization of Area Prostriata and its Projection to the Cingulate Motor Cortex in the Rhesus Monkey. Cerebral Cortex, 10(2):192-20, February 2000. (pdf) (bibtex: Morecraft-2000-LAP).
[Nusbaum et al., 2000]
A. O. Nusbaum, D. Lu, C.Y. Tang, and S. W. Altas. Quantitative Diffusion Measurements in Focal Multiple Sclerosis Lesions: Correlations with Appearance on T1-Weighted Images. Am. J. Roentgenol, 175:821-825, 2000. (bibtex: Nusbaum-2000-QDM).
[Pfefferbaum et al., 2000]
Adolf Pfefferbaum, Edith V. Sullivan, Maj Hedehus, Kelvin O. Lim, Elfar Adalsteinsson, and Michael Moseley. Age-Related Decline in Brain White Matter Anisotropy Measured With Spatially Corrected Echo-Planar Diffusion Tensor Imaging. Magnetic Resonance in Medicine, 44(2):259-268, August 2000. (pdf) (bibtex: Pfefferbaum-2000-ARD).
[Poupon et al., 2000]
C. Poupon, C. A. Clark, V. Frouin, J. Regis, I. Block, D. Le Behan, and J.-F. Mangin. Regularization of Diffusion-Based Direction Maps for the Tracking of Brain White Matter Fascicles. NeuroImage, 12:184-195, 2000. (ps) (bibtex: Poupon-2000-RDD).
[Unser, 2000]
Michael Unser. Sampling. 50 Years After Shannon. Proceedings of the IEEE, 88(4):569-587, April 2000. (pdf) (bibtex: Unser-2000-SYA).
[Wedeen et al., 2000]
V. J. Wedeen, T. G. Reese, D. S. Tuch, M. R. Weigel, J. G. Dou, R. M. Weiskoff, and D. Chessler. Mapping Fiber Orientation Spectra in Cerebral White Matter with Fourier-Transform Diffusion MRI. In Proceedings of 8th Annual Meeting ISMRM, Denver, page 82, 2000. (bibtex: Wedeen-2000-MFO).
[Wieshmann et al., 2000]
U.C. Wieshmann, M.R. Symms, G.J. Parker, C.A. Clark, L. Lemieux, G.J. Barker, and S.D. Shorvon. Diffusion tensor imaging demonstrates deviation of fibres in normal appearing white matter adjacent to a brain tumour. J Neurol Neurosurg Psychiatry, 68(4):501-3, 2000. (bibtex: Wieshmann-2000-DTI).

1999

[Droogan et al., 1999]
A. G. Droogan, C.A. Clark, D. J. Werring, G. J. Barker, W. I. McDonald, and D. H. Miller. Comparison of MS Clinical Subgroups Using Navigated Diffusion-Weighted Imaging. Magn. Reson. Imaging, 17:653-661, 1999. (bibtex: Droogan-1999-CMS).
[Kindlmann and Weinstein, 1999]
Gordon L. Kindlmann and David M. Weinstein. Hue-balls and lit-tensors for direct volume rendering of diffusion tensor fields. In IEEE Visualization '99, pages 183-190, 1999. (bibtex: Kindlmann-1999-HLD).
[Papadakis et al., 1999]
Nikolaos G. Papadakis, Da Xing, Christopher L. H. Huang, Laurance D. Hall, and T. Adrian Carpenter. A Comparative Study of Acquisition Schemes for Diffusion Tensor Imaging Using MRI. Journal of Magnetic Resonance, 137(1):67-82, March 1999. (pdf) (bibtex: Papadakis-1999-CSA).
[Weinstein et al., 1999]
David M. Weinstein, Gordon L. Kindlmann, and Eric C. Lundberg. Tensorlines: Advection-diffusion based propagation through diffusion tensor fields. In IEEE Visualization '99, pages 249-254, 1999. (bibtex: Weinstein-1999-TAD).
[Werring et al., 1999]
D. J. Werring, C. A. Clark, G. J. Barker, A. J. Thompson, and D. H. Miller. Diffusion Tensor Imaging of Lesions and Normal-Appearing White Matter in Multiple Sclerosis. Neurology, 52:1626-1632, 1999. (bibtex: Werring-1999-DTI).
[Xue et al., 1999]
Rong Xue, Peter C.M. van Zijl, Barbara J. Crain, Meiyappan Solaiyappan, and Susumu Mori. In vivo three-dimensional reconstruction of rat brain axonal projections by diffusion tensor imaging. Magnetic Resonance in Medicine, 42:1123-1127, 1999. (pdf) (bibtex: Xue-1999-ITR).

1998

[Guttmann et al., 1998]
C.R.G. Guttmann, F.A. Jolesz, R. Kikinis, R.J. Killiany, M.B. Moss, T. Sandor, and M.S. Albert. White matter changes with normal aging. Neurology, 50(4):972-978, April 1998. (html) (bibtex: Guttmann-1998-WMC).
[Nass et al., 1998]
Ruth Nass, Elissa Kramer, Walter Molofsky, Jon Melnick, Marylin de Hollisey, Mary Madrid, Jeffrey H. Wisoff, and Alejandro Berenstein. Perfusion Brain Scintigraphy Studies in Infants and Children with Malformations of the Vein of Galen. In Child Neurology Society Meeting, 1998. (doc) (bibtex: Nass-1998-PBS).

1997

[D.Sc. et al., 1997]
Terence H. Williams M.D. Ph.D. D.Sc., Nedzad Gluhbegovic M.D. Ph.D., and Jean Y. Jew M.D. The Human Brain: Dissections of the Real Brain. Unpublished (pdf) (bibtex: Williams-1997-THB), 1997.
[Morecraft et al., 1997]
R.J. Morecraft, J.L. Louie, C.M. Schroeder, and K. Aramov. Segregated Parallel Inputs to the Brachial Spinal Cord from the Cingulate Motor Cortex in the Monkey. NeuroReport, 8(18):3933-3938, December 1997. (bibtex: Morecraft-1997-SPI).

1996

[Horsfield et al., 1996]
M. A. Horsfield, M. Lai, and S. Webb. Apparent Diffusion Coefficients in Benign and Secondary Progressive Multiple Sclerosis by Nuclear Magnetic Resonance. Magn. Reson. Med., 36:393-400, 1996. (bibtex: Horsfield-1996-ADC).

1995

[Blatter et al., 1995]
Duane D. Blatter, Erin D. Bigler, Shawn D. Gale, Sterling C. Johnson, Carol V. Anderson, Bruce M. Burnett, Natalie Parker, Shanna Kurth, and Susan D. Horn. Quantitative Volumetric Analysis of Brain MR: Normative Database Spanning 5 Decades of Life. American Journal of Neuroradiology, 16:241-251, February 1995. (pdf) (bibtex: Blatter-1995-QVA).

1993

[Brummer et al., 1993]
M. E. Brummer, R. M. Mersereau, R. L. Eisner, and R. J. R. Automatic detection of brain contours in MRI data sets . IEEE Transactions on Medical Imaging, 12(2):153-166, June 1993. published (bibtex: Brummer-1993-ADO).
[Cruz-Neira et al., 1993]
Carolina Cruz-Neira, Daniel J. Sandin, and Thomas A. DeFanti. Surround-screen Projection-based Virtual Reality: The Design and Implementation of the CAVE. In Proceedings of ACM SIGGRAPH, volume 27, pages 135-142. ACM, August 1993. (pdf) (bibtex: Cruz-1993-SSP).

1991

[Callaghan et al., 1991]
P. T. Callaghan, A. Coy, D. MacGowan, K. J. Packer, and F. O. Zelaya. Diffraction-like Effects in NMR Diffusion Studies of Fluids in Porous Solids. Nature, 351:467-469, 1991. (bibtex: Callaghan-1991-DEN).

1990

[Cory and Galloway, 1990]
D. G. Cory and A. N. Galloway. Measurement of Translational Displacement Probabilities by NMR: An Indicator of Compartmentation. Magn. Reson. Med., 14:435-444, 1990. (bibtex: Cory-1990-MTD).
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