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Song Zhang, PhD 2006

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Projects

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Publications

2009

[Jankun-Kelly et al., 2009]
T. J. Jankun-Kelly, Song Zhang, A. C. Callan-Jones, Robert A. Pelcovits, V. A. Slavin, and David H. Laidlaw. Tensor Visualization and Defect Detection for Nematic Liquid Crystals using Shape Characteristics. In Visualization and Processing of Tensor Fields: Advances and Perspectives, pages 213-238. Springer-Verlag, 2009. (bibtex: JankunKelly-2009-TVD).

2008

[Correia et al., 2008]
Stephen Correia, David H. Laidlaw, David Tate, Stephanie Lee, Thom Voorn, Robert Paul, Song Zhang, Steven Salloway, and Paul Malloy. Quantitative Tractography Metrics of White Matter Integrity in Diffusion Tensor MRI. Neuroimage, 2008. (pdf) (bibtex: Correia-2008-QTM).
[Demiralp et al., 2008]
Cagatay Demiralp, Gregory Shakhnarovich, Song Zhang, and David H. Laidlaw. Slicing-based coherence measure for refining clusters of 3D curves. In Proceedings of MICCAI, 2008. (pdf) (bibtex: Demiralp-2008-SCM).
[Patel et al., 2008]
K. Patel, Stephen Correia, J. Foley, E. Schlicting, Song Zhang, David H. Laidlaw, and Steven Salloway. Grey and White Matter Changes on MRI and Diffusion-Tensor Imaging and Cognitive Function in Mild Cognitive Impairment. INS, February 2008. Unknown (doc) (bibtex: Patel-2008-GWM).
[Zhang et al., 2008]
Song Zhang, Stephen Correia, and David H. Laidlaw. Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method. IEEE Transactions on Visualization and Computer Graphics, 14(5):1044-1053, Sept-Oct 2008. (pdf) (bibtex: Zhang-2008-IWF).

2007

[Clayden et al., 2007]
J. D. Clayden, Song Zhang, Stephen Correia, and David H. Laidlaw. Fine-grained comparison of anisotropy differences between groups of white matter tracts. In Proceedings of ISMRM, 2007. (pdf) (bibtex: Clayden-2007-FCA).
[Demiralp et al., 2007]
Cagatay Demiralp, Daniel Acevedo, Song Zhang, David Tate, Stephen Correia, and David H. Laidlaw. Connectivity-aware sectional visualization of DTI volumes. Technical report, Department of Computer Science, Brown University, 2007. (pdf) (bibtex: Demiralp-2007-CSV).
[Laidlaw et al., 2007]
David H. Laidlaw, Stephanie Lee, Stephen Correia, David Tate, Robert Paul, Song Zhang, Steven Salloway, and Paul Malloy. Quantitative Tract of Interest Metrics for White Matter Integrity based on Diffusion Tensor MRI Data. Views Radiology, 8(4):2-4, 2007. (pdf) (bibtex: Laidlaw-2007-QTI).
[Patel et al., 2007]
K. Patel, Stephen Correia, J. Foley, E. Schlicting, Song Zhang, David H. Laidlaw, and Steven Salloway. Cognitive Impairment, Hippocampal Volume, and White Matter Integrity in CADASIL. In Proceedings of INS, 2007. (bibtex: Patel-2007-CIH).
[Paul et al., 2007]
Robert H. Paul, David H. Laidlaw, David F. Tate, Stephanie Lee, Karin Hoth, John Gunstad, Song Zhang, Jeffrey Lawrence, and Tim Flanigan. Neuropsychological and Neuroimaging Outcome of HIV-associated Progressive Multifocal Leukoencephalopathy in the Era of Antiretroviral Therapy. Journal of Integrative Neurocience, 6(1):191-204, March 2007. (pdf) (bibtex: Paul-2007-NNO).
[Zhang et al., 2007]
Song Zhang, Stephen Correia, and David H. Laidlaw. Template-based Automatic DTI Fiber Bundle Labeling. In Proceedings of ISMRM, 2007. (pdf) (bibtex: Zhang-2007-TAD).
[Zhang et al., 2007]
Song Zhang, Stephen Correia, and David H. Laidlaw. Identifying white-matter fiber bundles in DTI data using an automated proximity-based fiber-clustering method. IEEE, 2007. (pdf) (bibtex: Zhang-2007-IWM).

2006

[Callan-Jones et al., 2006]
A. C. Callan-Jones, Robert A. Pelcovits, Vadim Slavin, Song Zhang, David H. Laidlaw, and George B. Loriot. Simulation and Visualization of Topological Defects in Nematic Liquid Crystals. Physical Review E, 74(6), December 2006. (pdf) (bibtex: Callan-2006-SVT).
[Correia et al., 2006]
Stephen Correia, Stephanie Lee, Paul Malloy, Neil Mehta, Song Zhang, Steven Salloway, and David H. Laidlaw. Diffusion-Tensor MRI Tractography Methods for Assessing White Matter Health and Its Relationship to Cognitive Functioning. In Proceedings of the International Neurophisiological Society, Boston, February 2006. (doc) (bibtex: Correia-2006-DTM).
[Correia et al., 2006]
Stephen Correia, Stephanie Lee, Song Zhang, Paul Malloy, Steven Salloway, and David H. Laidlaw. Diffusion-tensor imaging tractography: Correlation with processing speed in aging. In Abstracts Proceedings of 10th International Conference on Alzheimer's Disease and Related Disorders (BEST POSTER AWARD), pages Abstract P2-270, 2006. (ppt) (bibtex: Correia-2006-DTI).
[Demiralp et al., 2006]
Cagatay Demiralp, Song Zhang, David Tate, Stephen Correia, and David H. Laidlaw. Connectivity-aware sectional visualization of 3D DTI volumes using perceptual flat-torus coloring and edge rendering. In Proceedings of Eurographics, 2006. (pdf) (bibtex: Demiralp-2006-CSV).
[Demiralp et al., 2006]
Cagatay Demiralp, Cullen Jackson, David Karelitz, Song Zhang, and David H. Laidlaw. CAVE and Fishtank Virtual-Reality Displays: A Qualitative and Quantitative Comparison. IEEE Transactions on Visualization and Computer Graphics, 12(3):323-330, May 2006. (pdf) (bibtex: Demiralp-2006-CFV).
[Lee et al., 2006]
Stephanie Lee, Stephen Correia, David Tate, Robert Paul, Song Zhang, Steven Salloway, Paul Malloy, and David H. Laidlaw. Quantitative Tract-of-Interest Metrics for White-Matter Integrity Based on Diffusion Tensor MRI Data. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), 2006. (pdf) (bibtex: Lee-2006-QTM).
[Simon et al., 2006]
Jack H. Simon, Song Zhang, David H. Laidlaw, David E. Miller, Mark Brown, John Corboy, and Jeffrey Bennett. Identification of Fibers at Risk for Degeneration by Diffusion Tractography in Patients at High Risk for MS after a Clinically Isolated Syndrome. Journal of Magnetic Resonance Imaging, October 2006. (pdf) (bibtex: Simon-2006-IFR).
[Tate et al., 2006]
David Tate, Robert Paul, Kathryn Coop, Timothy Flanigan, Song Zhang, David H. Laidlaw, and Karen Tashima. Altered Diffision Scalar Metrics in the Midsagittal Corpus Callosum are Associated with Cognition Among HIV Patients. In Proceedings of the 14th Conference on Retroviruses and Opportunistic Infections, Los Angeles, CA, 2006. (html) (bibtex: Tate-2006-ADS).
[Zhang et al., 2006]
Song Zhang, Stephen Correia, David F. Tate, and David H. Laidlaw. Correlating DTI fiber clusters with white-matter anatomy. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), 2006. (pdf) (bibtex: Zhang-2006-CDC).
[Zhang and Laidlaw, 2006]
Song Zhang and David H. Laidlaw. Sampling DTI integral curves based on DWI forward modeling. In Proceedings of the IEEE International Conference of the Engineering in Medicine and Biology Society (EMBS), New York, NY, August-September 2006. In Press (pdf) (bibtex: Zhang-2006-SDI).
[Zhang, 2006]
Song Zhang. Revealing White Matter Fiber Structure with Diffusion Imaging. PhD thesis, Brown University, August 2006. (pdf) (bibtex: Zhang-2006-RWM).
[Zhou et al., 2006]
Wenjin Zhou, Peter G. Sibley, Song Zhang, David Tate, and David H. Laidlaw. Perceptual Coloring and 2D Sketching for Segmentation of Neural Pathways. Siggraph 2006, Poster Compendium (BEST POSTER AWARD), August 2006. (pdf) (bibtex: Zhou-2006-PCS).

2005

[Correia et al., 2005]
Stephen Correia, Thea Brennan-Krohn, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Ischemic Vascular Disease and Mild Cognitive Impairment. In International Neuropsychological Society conference, February 2005. (ppt) (bibtex: Correia-2005-DTI).
[Correia et al., 2005]
Stephen Correia, Thea Brennan-Krohn, Erin Schlicting, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-tensor imaging in vascular cognitive impairment and mild cognitive impairment: relationship with executive functioning. In Proceedings of the 2nd Congress of the International Society for Vascular, Cognitive and Behavioural Disorders, Florence, Italy, June 2005. (pdf) (bibtex: Correia-2005-DTV).
[Kaufman et al., 2005]
Jason A. Kaufman, Eric T. Ahrens, David H. Laidlaw, Song Zhang, and John M. Allman. Anatomical analysis of an aye-aye brain (Daubentonia madagascariensis, primates: Prosimii) combining histology, structural magnetic resonance imaging, and diffusion-tensor imaging. Anatomical Record, 287A(1):1026-1037, November 2005. (pdf) (bibtex: Kaufman-2005-AAA).
[Simon et al., 2005]
Jack H. Simon, Song Zhang, David H. Laidlaw, D. E. Miller, M. Brown, J. Corboy, D. Singel, and J. Bennett. Strategy for Detecting Neuronal Fibers at Risk for Neurodegeneration In Earliest MS by Streamtube Tractography at 3T. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (pdf) (ppt) (bibtex: Simon-2005-SDN).
[Simon et al., 2005]
Jack H. Simon, John Corboy, Song Zhang, and David H. Laidlaw. Visualization of Fibers at Risk for Neuronal Tract Degeneration in Early MS by Streamtube Diffusion Tractography. Platform Presentation at the Academy of Neurology, Miami, FL, April 2005. (bibtex: Simon-2005-VFR).
[Tate et al., 2005]
David Tate, J. Gunstad, Robert Paul, Song Zhang, David H. Laidlaw, and Ronald Cohen. Fractional Anisotropy in Subcortical White Matter Regions of Interest Among Cardiovascular Patients. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (ppt) (bibtex: Tate-2005-FAS).
[Vilanova et al., 2005]
A. Vilanova, Song Zhang, G. Kindlmann, and David H. Laidlaw. An Introduction to Visualization of Diffusion Tensor Imaging and its Applications. In Visualization and Image Processing of Tensor Fields. Springer-Verlag, 2005. (pdf) (bibtex: Vilanova-2005-IVD).
[Zhang and Laidlaw, 2005]
Song Zhang and David H. Laidlaw. DTI Fiber Clustering and Cross-subject Cluster Analysis. In Proceedings International Society for Magnetic Resonance in Medicine (ISMRM), Miami, FL, May 2005. (pdf) (bibtex: Zhang-2005-DFC).

2004

[Acevedo et al., 2004]
Daniel Acevedo, Song Zhang, David H. Laidlaw, and Chris Bull. Color Rapid Prototyping for Diffusion Tensor MRI Visualization. In Proceedings of MICCAI 2004 Short Papers, September 2004. (pdf) (bibtex: Acevedo-2004-CRP).
[Ahrens et al., 2004]
Eric T. Ahrens, J.M.Allman, E.Bush, David H. Laidlaw, and Song Zhang. Comparative 3D Anatomy of the Prosimian Brain:DTI and Histological Studies. In Proceedings of the Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, 2004. (pdf) (bibtex: Ahrens-2004-CAP).
[Brennan-Krohn et al., 2004]
Thea Brennan-Krohn, Stephen Correia, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Vascular Disease. In Workshop on aging connections: Advanced MRI of age related white matter changes in the brain. ISMRM, 2004. (bibtex: Brennan-2004-DTI).
[Correia et al., 2004]
Steve Correia, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-tensor imaging: linear, planar, and spherical diffusion in CADASIL. In 9th International Conference on Alzheimer's Disease and Related Disorders, 2004. (bibtex: Correia-2004-DTI).
[Correia et al., 2004]
Stephen Correia, Thea Brennan-Krohn, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-Tensor Imaging and Executive Function in Subcortical Ischemic Vascular Disease and Mild Cognitive Impairment. In Proceedings of the International Neurophisiological Society, 2004. (pdf) (doc) (bibtex: Correia-2004-DIE).
[Laidlaw et al., 2004]
David H. Laidlaw, Song Zhang, Mark Bastin, Stephen Correia, Steven Salloway, and Paul Malloy. Ramifications of Isotropic Sampling and Acquisition Orientation on DTI Analyses. In Proceedings of the Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine, 2004. (pdf) (bibtex: Laidlaw-2004-RIS).
[Laidlaw et al., 2004]
David H. Laidlaw, Song Zhang, Mark Bastin, Stephen Correia, Steven Salloway, and Paul Malloy. Ramifications of Isotropic Sampling and Acquisition Orientation on DTI Analyses. Poster for Research Day at Butler Hospital, Providence, RI, 2004. (pdf) (ppt) (bibtex: Laidlaw-2004-RIA).
[Slavin et al., 2004]
Vadim Slavin, David H. Laidlaw, Song Zhang, Rovert Pelcovits, George Loriot, and Anderw Callan-Jones. Visualization of Topological Defects in Nematic Liquid Crystals Using Streamtubes, Streamsurfaces and Ellipsoids. IEEE Visualization 2004 Poster Compendium, October 2004. (pdf) (ppz) (zip) (bibtex: Slavin-2004-VTD).
[Wenger et al., 2004]
Andreas Wenger, Daniel Keefe, Song Zhang, and David H. Laidlaw. Interactive Volume Rendering of Thin Thread Structures within Multivalued Scientific Datasets. IEEE Transactions on Visualization and Computer Graphics, 10(6):664-672, November/December 2004. (pdf) (bibtex: Wenger-2004-IVR).
[Zhang et al., 2004]
Song Zhang, Mark Bastin, David H. Laidlaw, Saurabh Sinha, Paul A. Armitage, and Thomas S. Deisboeck. Visualization and Analysis of White Matter Structural Asymmetry in Diffusion Tensor MR Imaging Data. Magnetic Resonance in Medicine, 51(1):140-147, 2004. (pdf) (bibtex: Zhang-2004-VAW).
[Zhang et al., 2004]
Song Zhang, Gordon Kindlmann, and David H. Laidlaw. Diffusion Tensor MRI Visualization. In Visualization Handbook. Academic Press, June 2004. (pdf) (bibtex: Zhang-2004-DTM).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. A Model for some Subcortical DTI Planar and Linear Anisotropy. MICCAI 2004, September 2004. (pdf) (bibtex: Zhang-2004-MSS).
[Zhang et al., 2004]
Song Zhang, Jack H. Simon, David H. Laidlaw, Mark Brown, and David M. Miller. Visualization of the Interaction of Multiple Sclerosis lesions with adjacent white matter fibers using Streamtubes and Streamsurfaces. In IEEE Visualization Poster Compendium, October 2004. (pdf) (bibtex: Zhang-2004-VIM).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. DTI Fiber Clustering in the Whole Brain. IEEE Visualization 2004 Poster Compendium, October 2004. (pdf) (bibtex: Zhang-2004-DFC).
[Zhang and Laidlaw, 2004]
Song Zhang and David H. Laidlaw. Towards a Global Tractography-based Model of FA. In Workshop on aging connections: Advanded MRI of age related white matter changes in the brain. ISMRM, 2004. (pdf) (bibtex: Zhang-2004-TGT).

2003

[Demiralp et al., 2003]
Cagatay Demiralp, David H. Laidlaw, Cullen Jackson, Daniel Keefe, and Song Zhang. Subjective Usefulness of CAVE and Fish Tank VR Display Systems for a Scientific Visualization Application. In IEEE Visualization Poster Compendium, Seattle, WA, 2003. (pdf) (bibtex: Demiralp-2003-SUC).
[Zhang et al., 2003]
Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing Diffusion Tensor MR Images Using Streamtubes and Streamsurfaces. IEEE Transactions on Visualization and Computer Graphics, 9(4):454-462, October 2003. (pdf) (bibtex: Zhang-2003-VDT).

2002

[DaSilva et al., 2002]
Marco DaSilva, Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing the Differences between Diffusion Tensor Volume Images. In Proceedings ISMRM Workshop in Diffusion MRI: Biophysical Issues, pages 237-238, March 2002. (pdf) (bibtex: DaSilva-2002-VDD).
[Zhang et al., 2002]
Song Zhang, David H. Laidlaw, Mark Bastin, Saurabh Sinha, and Thomas S. Deisboeck. Application of DTI Visualization and Analysis on a Data Set from a Brain Tumor Patient. In IEEE Visualization Poster Compendium, October 2002. (pdf) (bibtex: Zhang-2002-AOD).
[Zhang and Laidlaw, 2002]
Song Zhang and David H. Laidlaw. Hierarchical Clustering of Streamtubes. Technical Report CS-02-18, Brown University Computer Science Department, August 2002. (bibtex: Zhang-2002-HCO).

2001

[DaSilva et al., 2001]
Marco DaSilva, Song Zhang, Cagatay Demiralp, and David H. Laidlaw. Visualizing Diffusion Tensor Volume Differences. In Visualization '01 Work in Progress Proceedings, pages 16-17, October 2001. (pdf) (bibtex: DaSilva-2001-VDT).
[Zhang et al., 2001]
Song Zhang, Cagatay Demiralp, Daniel Keefe, Marco DaSilva, Benjamin D. Greenberg, Peter J. Basser, Carlo Pierpaoli, E. A. Chiocca, T. S. Deisboeck, and David H. Laidlaw. An Immersive Virtual Environment for DT-MRI Volume Visualization Applications: a Case Study. In Proceedings of IEEE Visualization 2001, pages 437-440, October 2001. (pdf) (bibtex: Zhang-2001-IVE).
[Zhang and Laidlaw, 2001]
Song Zhang and David H. Laidlaw. Elucidating Neural Structure in Diffusion Tensor MRI Volumes using Streamtubes and Streamsurfaces. In Proc. 9th International Society of MR in Medicine, April 2001. (pdf) (bibtex: Zhang-2001-ENS).
[Zhang et al., 2001]
Song Zhang, Cagatay Demiralp, Marco DaSilva, Daniel Keefe, David H. Laidlaw, Benjamin D. Greenberg, Peter J. Basser, Carlo Pierpaoli, E.A. Chiocca, and T. S. Diesboeck. Toward Application of Virtual Reality to Visualization of DT-MRI Volumes. In Proceedings MICCAI, October 2001. (pdf) (bibtex: Zhang-2001-TAV).

2000

[Zhang et al., 2000]
Song Zhang, Charles T. Curry, Daniel S. Morris, and David H. Laidlaw. Streamtubes and Streamsurfaces for Visualizing Diffusion Tensor MRI Volume Images. In Visualization '00 Work in Progress, October 2000. (pdf) (bibtex: Zhang-2000-SSV).
[Zhang et al., 2000]
Song Zhang, Charles T. Curry, Daniel S. Morris, and David H. Laidlaw. Visualizing Diffusion Tensor MR Images Using Streamtubes and Streamsurfaces. Poster at Human Brain Project Annual Meeting, NIH, Bethesda, MD, May 2000. (bibtex: Zhang-2000-VDT).
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