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New Tractography literature

Author: Song Zhang

[Basser et al., 2000]
Peter J. Basser, Sinisa Pajevic, Carlo Pierpaoli, Jeffrey Duda, and Akram Aldroubi. In Vivo Fiber Tractography Using DT-MRI Data. Magnetic Resonance in Medicine, 44:625-632, 2000. (pdf) (bibtex: Basser-2000-IFT).
An overview of the issues in white matter fiber tracking.
[Xue et al., 1999]
Rong Xue, Peter C.M. van Zijl, Barbara J. Crain, Meiyappan Solaiyappan, and Susumu Mori. In vivo three-dimensional reconstruction of rat brain axonal projections by diffusion tensor imaging. Magnetic Resonance in Medicine, 42:1123-1127, 1999. (pdf) (bibtex: Xue-1999-ITR).
Fiber tracking in mice brain white matter
[Weinstein et al., 1999]
David M. Weinstein, Gordon L. Kindlmann, and Eric C. Lundberg. Tensorlines: Advection-diffusion based propagation through diffusion tensor fields. In IEEE Visualization '99, pages 249-254, 1999. (bibtex: Weinstein-1999-TAD).
Stablizing the tracking in DTI
[Kindlmann and Weinstein, 1999]
Gordon L. Kindlmann and David M. Weinstein. Hue-balls and lit-tensors for direct volume rendering of diffusion tensor fields. In IEEE Visualization '99, pages 183-190, 1999. (bibtex: Kindlmann-1999-HLD).
Volume rendering approach in DTI visualization
[Poupon et al., 2000]
C. Poupon, C. A. Clark, V. Frouin, J. Regis, I. Block, D. Le Behan, and J.-F. Mangin. Regularization of Diffusion-Based Direction Maps for the Tracking of Brain White Matter Fascicles. NeuroImage, 12:184-195, 2000. (ps) (bibtex: Poupon-2000-RDD).
Regularizing DTI according to low curvature assumption
[Inati et al., 2001]
S. Inati, H. Farid, K. Sherwin, and S. Grafton. A Global Probabilistic Approach to Fiber Tractography with Diffusion Tensor MRI . In Human Brain Mapping 2001, 2001. (bibtex: Inati-2001-GPA).
Use expectation maximization on a set of Bezier curve models for fiber tracking.
[Brun et al., 2002]
A. Brun, M. Bjornemo, R. Kikinis, and C.-F. Westin. White Matter Tractography Using Sequential Importance Sampling. In ISMRM 2002, page 1131, 2002. (pdf) (bibtex: Brun-2002-WMT).
see Bjornemo:2002:WMF
[Bjornemo and Brun, 2002]
Mats Bjornemo and Anders Brun. White Matter Fiber Tracking Using Diffusion Tensor MRI. Master's thesis, Linkoping University, 2002. (pdf) (bibtex: Bjornemo-2002-WMF).
Using SISR(sequential importance sampling and resampling) method to estimate the importance of the a fiber(statisical model).
[Batchelor et al., 2002]
P.G. Batchelor, D.L.G. Hill, D. Atkinson, F. Calamanten, and A. Connellyn. Fibre-tracking by solving the diffusion-convection equation. In Proceedings of ISMRM 2002, 2002. (pdf) (bibtex: Batchelor-2002-FSD).
Added a convection term to the diffusion equation, and use FEM to solve the PDE.
[DS, 2002]
Tuch DS. Mapping cortical connectivity with diffusion MRI. In 2002 IEEE International Symposium on Biomedical Imaging, 2002. (bibtex: Tuch-2002-MCC).
[ .html ] Use a statistical model for the path and estimate the probability of the path, find the optimal path between the two points.
[Tuch, 2002]
D. S. Tuch. Diffusion MRI of complex tissue structure. PhD thesis, Harvard, 2002. (pdf) (bibtex: Tuch-2002-DMC).
[Tuch et al., 2002]
D.S. Tuch, T.G. Reese, M.R. Wiegell, N. Makris, J.W. Belliveau, and V.J. Wedeen. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magnetic Resonance in Medicine, 48(4):577-582, October 2002. (pdf) (bibtex: Tuch-2002-HAR).
As title suggests, the paper show that high angular diffusion imaging helps reveal the crossing.
[Coulon et al., 2001]
O. Coulon, D.C. Alexander, and S.R. Arridge. Tensor Field Regularisation for DT-MR Images. In Proceedings of British Conference on Medical Image Understanding and Analysis, 2001. (pdf) (bibtex: Coulon-2001-TFR).
Regularizing principle diffusion direction in an anisotropic fashion. The regularization increases smoothness in PPD.
[Alexander et al., 2001]
D. C. Alexander, C. Pierpaoli, P. J. Basser, and J. C. Gee. Spatial Transformations of Diffusion Tensor Magnetic Resonance Images. IEEE TRANSACTIONS ON MEDICAL IMAGING, 20(11), November 2001. (pdf) (bibtex: Alexander-2001-STD).
How to perserve orientational information while applying transformations to DTI datasets.
[Donnell et al., 2002]
Lauren O Donnell, Steven Haker, and Carl-Fredrik Westin. New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor MRI: Elliptic PDEs and Geodesics in a Tensor-Warped Space . In MICCAI2002, 2002. (bibtex: ODonnell-2002-NAE).
Fiber tracking by solving the steady state heat flow in DTI field.
[Campbell et al., 2002]
J. S. W. Campbell, K. Siddiqi, Baba C. Vemuri, and G. B. Pike. A Geometric Flow for White Matter Fibre Tract Reconstruction. In International Symposium On Biomedical Imaging, 2002. (pdf) (bibtex: Campbell-2002-GFW).
Using geometric flow to construct fibers. Construct multipal fibers in parallelle. Deal with branches and merging points.
[Westin et al., 2002]
C.-F. Westin, S.E. Maier, H. Mamata, A. Nabavi, F.A. Jolesz, and R. Kikinis. Processing and visualization for diffusion tensor MRI. Medical Image Analysis, 6(93-108), 2002. (pdf) (bibtex: Westin-2002-PVD).
[Parker et al., 2002]
Geoffrey J. M. Parker, Klaas E. Stephan, Gareth J. Barker, James B. Rowe, David G. MacManus, Claudia A. M. Wheeler-Kingshott, Olga Ciccarelli, Richard E. Passingham, Rachel L. Spinks, Roger N. Lemon, and Robert Turner. Initial Demonstration of in Vivo Tracing of Axonal Projections in the Macaque Brain and Comparison with the Human Brain Using Diffusion Tensor Imaging and Fast Marching Tractography. NeuroImage, 15(797-809), April 2002. (pdf) (bibtex: Parker-2002-IDI).
Using fast marching tractography to track fibers in macaque brain and compare it with human brain.
[AI et al., 2001]
Holodny AI, Schwartz TH, Ollenschleger M, Liu W, and Schulder M. Tumor involvement of the corticospinal tract by tumor: diffusion magnetic resonance tractography with intraoperative correlation. Journal of Neurosurgery, 95(1082), 2001. (bibtex: Holodny-2001-ICT).
[Hagmann et al., 2002]
P. Hagmann, J.-P. Thiran, P. Vandergheynst, S. Clarke, and R. Meuli. Statistical Fiber Tracking on DT-MRI data as a Potential Tool for Morphological Brain Studies. In ISMRM Workshop on Diffusion MRI: Biophysical Issues (2002), page 240, 2002. (pdf) (bibtex: Hagmann-2002-SFT).
Use a virtual partical random walk model to track the fibers.
[Bjornemo et al., 2002]
Mats Bjornemo, Anders Brun, Ron Kikinis, and Carl-Fredrik Westin. Regularized Stochastic White Matter Tractography Using Diffusion Tensor MRI. In MICCAI2002, 2002. (pdf) (bibtex: Bjornemo-2002-RSW).
Abstract. The development of Diffusion Tensor MRI has raised hopes in the neuro-science community for in vivo methods to track fiber paths in the white matter. A number of approaches have been presented, but there are still several essential problems that need to be solved. In this paper a novel fiber propaga-tion model is proposed, based on stochastics and regularization, allowing paths originating in one point to branch and return a probability distribution of possible paths. The proposed method utilizes the principles of a statistical Monte Carlo method called Sequential Importance Sampling and Resampling (SISR).
[Pfefferbaum et al., 2000]
Adolf Pfefferbaum, Edith V. Sullivan, Maj Hedehus, Kelvin O. Lim, Elfar Adalsteinsson, and Michael Moseley. Age-Related Decline in Brain White Matter Anisotropy Measured With Spatially Corrected Echo-Planar Diffusion Tensor Imaging. Magnetic Resonance in Medicine, 44(2):259-268, August 2000. (pdf) (bibtex: Pfefferbaum-2000-ARD).
[Guimond et al., 2002]
Alexandre Guimond, Charles R. G. Guttmann, Simon K. Warfield, and Carl-Fredrik Westin. Deformable Registration of DT-MRI Data Based on Transfomration Invariant Tensor Characteristics. In Proceedings of the IEEE International Symposium on Biomedical Imaging, July 2002. (pdf) (bibtex: Guimond-2002-DRD).
[Ruiz-Alzola et al., 2002]
J. Ruiz-Alzola, C.F. Westin, S.K. Warfield, C. Alberola, S. Maier, and R. Kikinis. Nonrigid registration of 3D tensor medical data. Medical Image Analysis, 6(2):143-161, June 2002. (pdf) (bibtex: RuizAlzola-2002-NR3).
[Zhang et al., 2004]
Song Zhang, Mark Bastin, David H. Laidlaw, Saurabh Sinha, Paul A. Armitage, and Thomas S. Deisboeck. Visualization and Analysis of White Matter Structural Asymmetry in Diffusion Tensor MR Imaging Data. Magnetic Resonance in Medicine, 51(1):140-147, 2004. (pdf) (bibtex: Zhang-2004-VAW).
[Papadakis et al., 1999]
Nikolaos G. Papadakis, Da Xing, Christopher L. H. Huang, Laurance D. Hall, and T. Adrian Carpenter. A Comparative Study of Acquisition Schemes for Diffusion Tensor Imaging Using MRI. Journal of Magnetic Resonance, 137(1):67-82, March 1999. (pdf) (bibtex: Papadakis-1999-CSA).
[Piegl and Tiller, 1995]
Les Piegl and Wayne Tiller. The Nurbs Book. Springer, 1995. (bibtex: Piegl-1995-NBK).
[Correia et al., 2004]
Steve Correia, Song Zhang, David H. Laidlaw, Paul Malloy, and Steven Salloway. Diffusion-tensor imaging: linear, planar, and spherical diffusion in CADASIL. In 9th International Conference on Alzheimer's Disease and Related Disorders, 2004. (bibtex: Correia-2004-DTI).
[Behrens et al., 2003]
T.E.J. Behrens, M.W. Woolrich, M. Jenkinson, H. Johansen-Berg, R.G. Nunes, S. Clare, P.M. Matthews, J.M. Brady, and S.M. Smith. Characterization and Propagation of Uncertainty in Diffusion-Weighted MR Imaging. Magnetic Resonance in Medicine, 50:1077-1088, 2003. (pdf) (bibtex: Behrens-2003-CPU).
[Catani et al., 2002]
Marco Catani, Robert J. Howard, Sinisa Pajevic, and Derek K. Jones. Virtual in Vivo Interactive Dissection of White Matter Fasciculi in the Human Brain. NeuroImage, 17:77-94, 2002. (pdf) (bibtex: Catani-2002-VII).
[Kemper, 2003]
Corey Ann Kemper. Incorporation of Diffusion Tensor MRI in Non-Rigid Registration for Image-Guided Neurosurgery. Master's thesis, Massachusetts Institute of Technology, 2003. (pdf) (bibtex: Kemper-2003-IDT).
[Xu et al., 2002]
Dongrong Xu, Susumu Mori, Meiyappan Solaiyappan, Peter C. M. van Zijl, and Christos Davatzikos. A Framework for Callosal Fiber Distribution Analysis. NeuroImage, 17:1131-1143, 2002. (pdf) (bibtex: Xu-2002-FCF).
[Basser and Pajevic, 2003]
Peter J. Basser and Sinisa Pajevic. Dealing with Uncertainty in Diffusion Tensor MR Data. Israel Journal of Chemistry, 43:129-144, 2003. (pdf) (bibtex: Basser-2003-DUD).
[Jones, 2003]
Jerek K. Jones. Determining and Visualizing Uncertainty in Estimates of Fiber Orientation From Diffusion Tensor MRI. Magnetic Resonance in Medicine, 49:7-12, 2003. (pdf) (bibtex: Jones-2003-DVN).
[Bihan et al., 2001]
Denis Le Bihan, Jean-Francois Mangin, Cyril Poupon, Chris A. Clark, Sabina Pappata, Nicolas Molko, and Hughes Chabriat. Diffusion Tensor Imaging: Concepts and Applications. JOURNAL OF MAGNETIC RESONANCE IMAGING, 13:534-546, 2001. (pdf) (bibtex: LeBihan-2001-DTI).
[Zhukov et al., 2000]
Leonid Zhukov, David Weinstein, and Chris Johnson. Independent Component Analysis for EEG Source Localization In Realistic Head Models. IEEE Engineering in Medicine and Biology, 3(19):87-96, May 2000. (pdf) (bibtex: Zhukov-2000-ICA).
[Zhukov and Barr, 2002]
L. Zhukov and A. Barr. Oriented tensor reconstruction: tracing neural pathways from diffusion tensor MRI. In Proceedings of the IEEE Visualization '02, pages 387-394, 2002. (pdf) (bibtex: Zhukov-2002-OTR).
[Frank, 2002]
Lawrence R. Frank. Characterization of Anisotropy in High Angular Resolution Diffusion-Weighted MRI. Magnetic Resonance in Medicine, 47:1083-1099, 2002. (pdf) (bibtex: Frank-2002-CAH).
[Jones et al., 2002]
D. K. Jones, L.D. Griffin, D.C. Alexander, M. Catani, M.A. Horsfield, R. Howard, and S.C. Williams. Spatial normalization and averaging of diffusion tensor MRI data sets. Neuroimage, 17(2):592-617, 2002. (pdf) (bibtex: Jones-2002-SNA).
[Lazar et al., 2003]
Mariana Lazar, David M.Weinstein, Jay S.Tsuruda, Khader M.Hasan, Konstantinos Arfanakis, M.Elizabeth Meyerand, Benham Badie, Howard A.Rowley, Victor Haughton, Aaron Field, , and Andrew L.Alexander. White Matter Tractography Using Diffusion Tensor Deflection. Human Brain Mapping, 18:306-321, 2003. (pdf) (bibtex: Lazar-2003-WMT).
[Park et al., 2003]
Hae-Jeong Park, Marek Kubicki, Martha E. Shenton, Alexandre Guimond, Robert W. McCarley, Stephan E. Maier, Ron Kikinis, Ferenc A. Jolesz, and Carl-Fredrik Westin. Spatial normalization of diffusion tensor MRI using multiple channels. NeuroImage, 20:1995-2009, 2003. (pdf) (bibtex: Park-2003-SND).
[Pierpaoli et al., 2001]
Carlo Pierpaoli, Alan Barnett, Sinisa Pajevic, Robert Chen, LaRoy Penix, Anette Virta, and Peter Basser. Water Diffusion Changes in Wallerian Degeneration and Their Dependence on White Matter Architecture. NeuroImage, 13:1174-1185, 2001. (pdf) (bibtex: Pierpaoli-2001-WDC).
[SIJBERS, 1998]
Jan SIJBERS. SIGNAL AND NOISE ESTIMATION FROM MAGNETIC RESONANCE IMAGES. PhD thesis, UNIVERSITEIT ANTWERPEN, 1998. (pdf) (bibtex: Sijbers-1998-SNA).
[Stegmann, 2004]
Mikkel B. Stegmann. Generative Interpretation of Medical Images. PhD thesis, Informatics and Mathematical Modelling Technical University of Denmark, 2004. (pdf) (bibtex: Stegmann-2004-GIM).
[Turk and Banks, 1996]
G. Turk and D. Banks. Image-guided streamline placement. In Proceedings of SIGGRAPH 96, pages 453-460. ACM SIGGRAPH, 1996. (pdf) (bibtex: Turk-1996-IGS).
[Aldroubi and Basser, 1999]
Akram Aldroubi and Peter Basser. Reconstruction of vector and tensor fields from sampled discrete data. Contemporary Mathematics of the Amer. Math. Soc., 247:1-15, 1999. (pdf) (bibtex: Aldroubi-1999-RVT).
[Parker et al., 2000]
Geoffrey J.M. Parker, Julia A. Schnabel, Mark R. Symms, David J. Werring, and Gareth J. Barker. Nonlinear Smoothing for Reduction of Systematic and Random Errors in Diffusion Tensor Imaging. JOURNAL OF MAGNETIC RESONANCE IMAGING, 11:702-710, 2000. (pdf) (bibtex: Parker-2000-NSR).
[Zheng and Pang, 2002]
Xiaoqiang Zheng and Alex Pang. Volume Deformation For Tensor Visualization. In Proceedings of IEEE Visualization, pages 379-386, 2002. (pdf) (bibtex: Zheng-2002-VDF).
[Ciccarelli et al., 2003]
O. Ciccarelli, A.T. Toosy, G.J.M. Parker, C.A.M. Wheeler-Kingshott, G.J. Barker, D.H. Miller, and A.J. Thompson. Diffusion tractography based group mapping of major white-matter pathways in the human brain. NeuroImage, 19:1545-1555, 2003. (pdf) (bibtex: Ciccarelli-2003-DTB).
[Ciccarelli et al., 2003]
O. Ciccarelli, G.J.M. Parker, A.T. Toosy, C.A.M. Wheeler-Kingshott, G.J. Barker, P.A. Boulby, D.H. Miller, and A.J. Thompson. From diffusion tractography to quantitative white matter tract measures: a reproducibility study. NeuroImage, 18:348-359, 2003. (pdf) (bibtex: Ciccarelli-2003-FDT).
[Golay et al., 2002]
Xavier Golay, Hangyi Jiang, Peter C.M. van Zijl, and Susumu Mori. High-Resolution Isotropic 3D Diffusion Tensor Imaging of the Human Brain. Magnetic Resonance in Medicine, 47:837-843, 2002. (pdf) (bibtex: Golay-2002-HID).
[Guye et al., 2003]
Maxime Guye, Geoffrey J.M. Parker, Mark Symms, Philip Boulby, Claudia A.M. Wheeler-Kingshott, Afraim Salek-Haddadi, Gareth J. Barker, and John S. Duncan. Combined functional MRI and tractography to demonstrate the connectivity of the human primary motor cortex in vivo. NeuroImage, 19:1349-1360, 2003. (pdf) (bibtex: Guye-2003-CFM).
[Mangin et al., 1995]
Jean-Francois Mangin, Jean Regis, Isabelle Bloch, Vincent Frouin, Y. Samson, and Jaime Lopez-Krahe. A MRF Based Random Graph Modelling the Human Cortical Topography. CVRMed, (177-183), 1995. (pdf) (bibtex: Mangin-1995-MBR).
[Tench et al., 2002]
C.R. Tench, P.S. Morgan, M. Wilson, and L.D. Blumhardt. White Matter Mapping Using Diffusion Tensor MRI. Magnetic Resonance in Medicine, 47:967-972, 2002. (pdf) (bibtex: Tench-2002-WMM).
[Tuch et al., 1999]
D.S. Tuch, R.M. Weisskoff, J.W. Belliveau, and V.J. Wedeen. High angular resolution diffusion imaging of the human brain. In Proceedings of the 7th Annual Meeting of ISMRM, page 321, 1999. (bibtex: Tuch-1999-HAR).
[Poupon et al., 2001]
C. Poupon, J. Mangin, C.A. Clark, V. Frouin, J. Regis, D. Le Bihan, and I. Bloch. Towards inference of human brain connectivity from MR diffusion tensor data. Med. Image Anal., 5(1):1-15, 2001. (pdf) (bibtex: Poupon-2001-TIH).
[Riviere et al., 2000]
Denis Riviere, Jean-Francois Mangin, Dimitri Papadopoulos-Orfanos, Jean-Marc Martinez, Vincent Frouin, and Jean Regis. Automatic Recognition of Cortical Sulci Using a Congregation of Neural Networks. In MICCAI, pages 40-49, 2000. (pdf) (bibtex: Riviere-2000-ARC).
[Hagmann et al., 2003]
P. Hagmann, J.-P. Thiran, L. Jonasson, P. Vandergheynst, S. Clarke, P. Maeder, and R. Meulib. DTI mapping of human brain connectivity: statistical fibre tracking and virtual dissection. NeuroImage, 19:545-554, 2003. (pdf) (bibtex: Hagmann-2003-DMH).
fiber mapping
[Parker et al., 2003]
Geoffrey J.M. Parker, Hamied A. Haroon, and Claudia A.M. Wheeler-Kingshott. A Framework for a Streamline-Based Probabilistic Index of Connectivity (PICo) Using a Structural Interpretation of MRI Diffusion Measurements. JOURNAL OF MAGNETIC RESONANCE IMAGING, 18:242-254, 2003. (pdf) (bibtex: Parker-2003-FSP).
[Campbell et al., 2004]
Jennifer S. W. Campbell, Kaleem Siddiqi, and G. Bruce Pike. WHITE MATTER FIBRE TRACTOGRAPHY AND SCALAR CONNECTIVITY ASSESSMENT USING FIBRE ORIENTATION LIKELIHOOD DISTRIBUTION. In CVPR, 2004. (pdf) (bibtex: Campbell-2004-WMF).
[Campbell et al., 2002]
Jennifer S.W. Campbell, Kaleem Siddiqi, and G. Bruce Pike. White Matter Fibre Tract Likelihood Evaluated using Normalized RMS Diffusion Distance. In ISMRM, page 1130, 2002. (pdf) (bibtex: Campbell-2002-WMF).
[Caramanos et al., 2002]
Z. Caramanos, J.S.W. Campbell, S. Narayanan, S.J. Francis, S.B. Antel, H. Reddy, P.M. Matthews, D. Sappey-Marinier, G.B. Pike, and D. L. Arnold. Axonal Integrity and Fractional Anisotropy in the Normal-Appearing White Matter of Patients with Multiple Sclerosis: Relationship to Cerebro-Functional Reorganization and Clinical Disability. In ISMRM, page 590, 2002. (pdf) (bibtex: Caramanos-2002-AIF).
[Corouge et al., 2004]
Isabelle Corouge, Sylvain Gouttard, and Guido Gerig. TOWARDS A SHAPE MODEL OF WHITE MATTER FIBER BUNDLES USING DIFFUSION TENSOR MRI. In International Symposium on Biomedical Imaging, pages 344-347, 2004. (pdf) (bibtex: Corouge-2004-TSM).
[Zhang et al., 2001]
Y. Zhang, M. Brady, and S. Smith. Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE Transactions on Medical Imaging, 20(1):45-57, 2001. (pdf) (bibtex: Zhang-2001-SBM).
[Pierpaoli et al., 2001]
C. Pierpaoli, A.S. Barnett, S. Pajevic, A. Virta, and P.J. Basser. Validation of DT-MRI tractography in the descending motor pathways of human subjects. In International Society for Magnetic Resonance in Medicine (ISMRM), page 501, Glasgow, 2001. (bibtex: Pierpaoli-2001-VDT).
[Sinha et al., 2004]
S. Sinha, M. E. Bastin, J. M. Wardlaw, P. A. Armitage, and I. R. Whittle. Effects of dexamethasone on peritumoural oedematous brain: a DT-MRI study. J. Neurol. Neurosurg. Psychiatry, 2004. In Press (bibtex: Sinha-2004-EDP).
[Duda et al., 2000]
R. O. Duda, P. E. Hart, and D. G. Stork. Pattern Classification. Wiley-Interscience Publication, 2000. (bibtex: Duda-2000-PCL).
[Ragin et al., 2004]
A. B. Ragin, P. Storey, B. A. Cohen, L. G. Epstein, and R. R. Edelman. Whole brain diffusion tensor imaging in HIV-associated cognitive impairment. AJNR Am. J. Neuroradiol., 25(2):195-200, 2004. (bibtex: Ragin-2004-WBD).
[Ding et al., 2003]
Zhaohua Ding, John C. Gore, and Adam W. Anderson. Classification and Quantification of Neuronal Fiber Pathways Using Diffusion Tensor MRI. Magnetic Resonance in Medicine, 49:716-721, 2003. (pdf) (bibtex: Ding-2003-CQN).
[CONTURO et al., 1999]
THOMAS E. CONTURO, NICOLAS F. LORI, THOMAS S. CULL, ERBIL AKBUDAK, ABRAHAM Z. SNYDER, JOSHUA S. SHIMONY, ROBERT C. MCKINSTRY, HAROLD BURTON, and MARCUS E. RAICHLE. Tracking neuronal fiber pathways in the living human brain. In Proc. Natl. Acad. Sci. USA, pages 10422-10427, August 1999. (pdf) (bibtex: Conturo-1999-TNF).
[Jones et al., 1999]
D. K. Jones, A. Simmons, S. C. Williams, and M. A. Horsfield. Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magnetic Resonance in Medicine, 42(1):37-41, July 1999. (pdf) (bibtex: Jones-1999-NAA).
[Mori et al., 2000]
S. Mori, W. E. Kaufmann, J. D. Pearlson, B. J. Crain, B. Stieltjes, M. Solaiyappan, and P. C. van Zijl. In vivo visualization of human neural pathways by magnetic resonance imaging. Ann. Neurol., 47(3):421-424, March 2000. (bibtex: Mori-2000-IVV).
[Parker et al., 2002]
Geoffrey J. M. Parker, Claudia A. M. Wheeler-Kingshott, and Gareth J. Barker. Estimating Distributed Anatomical Connectivity Using Fast Marching Methods and Diffusion Tensor Imaging. IEEE TRANSACTIONS ON MEDICAL IMAGING, 21(5):505-512, May 2002. (pdf) (bibtex: Parker-2002-EDA).
[Burgel et al., 1999]
U. Burgel, T. Schormann, A. Schleicher, and K. Zilles. Mapping of Histologically Identified Long Fiber Tracts in Human Cerebral Hemispheres to the MRI Volume of a Reference Brain: Position and Spatial Variability of the Optic Radiation. NeuroImage, 10:489-499, 1999. (pdf) (bibtex: Burgel-1999-MHI).
[Rademacher et al., 2001]
J. Rademacher, U. Burgel, S. Geyer, T. Schormann, A. Schleicher, H. J. Freund, and K. Zilles. Variability and asymmetry in the human precentral motor system. A cytoarchitectonic and myeloarchitectonic brain mapping study. Brain, 124:2232-2258, 2001. (pdf) (bibtex: Rademacher-2001-VAH).
[Maier et al., 2004]
Stephan E. Maier, Sridhar Vajapeyam, Hatsuho Mamata, Carl-Fredrik Westin, Ferenc A. Jolesz, and Robert V. Mulkern. Biexponential Diffusion Tensor Analysis of Human Brain Diffusion Data. Magnetic Resonance in Medicine, 51:321-330, 2004. (pdf) (bibtex: Maier-2004-BDT).
[Meyer et al., 1999]
James W. Meyer, Nikos Makris, Julianna F. Bates, Verne S. Caviness, Jr, and David N. Kennedy. MRI-Based Topographic Parcellation of Human Cerebral White Matter, I. Technical Foundations. NeuroImage, 9:1-17, 1999. (pdf) (bibtex: Meyer-1999-MTP).
[Mori and Barker, 1999]
Susumu Mori and Peter B. Barker. Diffusion Magnetic Resonance Imaging: Its Principle and Applications. THE ANATOMICAL RECORD (NEW ANAT.), 257:102-109, 1999. (pdf) (bibtex: Mori-1999-DMR).
[Kubicki et al., 2002]
Marek Kubicki, Carl-Fredrik Westin, Stephan E. Maier, Hatsuho Mamata, Melissa Frumin, Hal Ersner-Hershfield, Ron Kikinis, Ferenc A. Jolesz, Robert McCarley, and Martha E. Shenton. Diffusion Tensor Imaging and Its Application to Neuropsychiatric Disorders. Harvard Rev. of Psychiatry, 10:234-336, 2002. (pdf) (bibtex: Kubicki-2002-DTI).
Survey on indices, applications
[Sundgren et al., 2004]
P. C. Sundgren, Q. Dong, D. Gomez-Hassan, S. K. Mukherji, P. Maly, and R. Welsh. Diffusion tensor imaging of the brain: review of clinical applications. Neuroradiology, 46(5):339-350, May 2004. (pdf) (bibtex: Sundgren-2004-DTI).
[Spicer et al., 2004]
Mark A. Spicer, Martin van Velsen, John P. Caffrey, and Michael L. J. Apuzzo. VIRTUAL REALITY NEUROSURGERY: A SIMULATOR BLUEPRINT. Neurosurgery, 54(4):783-797, April 2004. (pdf) (bibtex: Spicer-2004-VRN).
[Peng et al., 2004]
S. S. Peng, W. T. Lee, Y. H. Wang, and K. M. Huang. Cerebral diffusion tensor images in children with tuberous sclerosis: a preliminary report. Pediatr. Radiol., 34(5):387-392, May 2004. (bibtex: Peng-2004-CDT).
[Yoshikawa et al., 2004]
K. Yoshikawa, Y. Nakata, K. Yamada, and M. Nakagawa. Early pathological changes in the parkinsonian brain demonstrated by diffusion tensor MRI. J. Neurol. Neurosurg. Psychiatry, 75:481-484, 2004. (pdf) (bibtex: Yoshikawa-2004-EPC).
[Dong et al., 2004]
Qian Dong, Robert C. Welsh, Thomas L. Chenevert, Ruth C. Carlos, Pia Maly-Sundgren, Diana M. Gomez-Hassan, and Suresh K. Mukherji. Clinical Applications of Diffusion Tensor Imaging. JOURNAL OF MAGNETIC RESONANCE IMAGING, 19:6-18, 2004. (pdf) (bibtex: Dong-2004-CAD).
[Kim et al., 2003]
Dae-Shik Kim, Mina Kima, Itamar Ronena, Elia Formisanob, Keun-Ho Kima, Kamil Ugurbila, Susumu Moric, and Rainer Goebelb. In vivo mapping of functional domains and axonal connectivity in cat visual cortex using magnetic resonance imaging . Magnetic Resonance Imaging, 21(10):1131-1140, December 2003. (pdf) (bibtex: Kim-2003-IVM).
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Warren D. Taylor, Edward Hsu, K. Ranga Rama Krishnan, and James R. MacFall. Diffusion Tensor Imaging: Background, Potential, and Utility in Psychiatric Research. BIOL. PSYCHIATRY, 55:201-207, 2004. (pdf) (bibtex: Taylor-2004-DTI).
Survey of DTI in Psychiatric Research
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Philip R. Szeszko, Joshua Vogel, Manzar Ashtari, Anil K. Malhotra, John Bates, John M. Kane, Robert M. Bilder, Theresa Frevert, and Kelvin Lim. Sex differences in frontal lobe white matter microstructure: a DTI study. NeuroReport, 14(18):2469-2473, December 2003. (pdf) (bibtex: Szeszko-2003-SDF).
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David S. Tuch, Timothy G. Reese, Mette R. Wiegell, and Van J. Wedeen. Diffusion MRI of Complex Neural Architecture. Neuron, 40:885-895, December 2003. (pdf) (bibtex: Tuch-2003-DMC).
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J. S. Wu, L. F. Zhou, X. N. Hong, Y. Mao, and G. H. Du. Role of diffusion tensor imaging in neuronavigation surgery of brain tumors involving pyramidal tracts. Zhonghua Wai Ke Za Zhi, 41(9):662-666, September 2003. (bibtex: Wu-2003-RDT).
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O. Coulon, D.C. Alexander, and S. Arridge. Diffusion tensor magnetic resonance image regularization. Medical Image Analysis, 8:47-67, 2004. (pdf) (bibtex: Coulon-2004-DTM).
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Setsu Wakana, Hangyi Jiang, Lidia M. Nagae-Poetscher, Peter C. M. van Zijl, and Susumu Mori. Fiber Tract–based Atlas of Human White Matter Anatomy. Radiology, 230:77-87, 2004. (pdf) (bibtex: Wakana-2004-FTA).
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Rene Westerhausen, Christof Walter, Frank Kreuder, Ralf Arne Wittling, Elisabeth Schweiger, and Werner Wittling. The influence of handedness and gender on the microstructure of the human corpus callosum: a diffusion-tensor magnetic resonance imaging study. Neuroscience Letters, 351:99-102, 2003. (pdf) (bibtex: Westerhausen-2003-IHG).
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Richard Watts, Conor Liston, Sumit Niogi, and Aziz M. Ulug. FIBER TRACKING USING MAGNETIC RESONANCE DIFFUSION TENSOR IMAGING AND ITS APPLICATIONS TO HUMAN BRAIN DEVELOPMENT. MENTAL RETARDATION AND DEVELOPMENTAL DISABILITIES RESEARCH REVIEWS, 9:168-177, 2003. (pdf) (bibtex: Watts-2003-FTU).
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